New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3621314NA (NA)8 (0.100) 5/168 NT 100% coding (2123/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 3621344 0 (0.000)coding (2153/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor

CTTATCCGCAGCGAGGATGAGGGTCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAAGGGTGAAACCGCAGAGCGGTGGCAGTATGACGAACGTGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGGCGGTGCA  >  NC_000913/3621244‑3621413
                                                                      |                                                                                                   
cTTATCCGCAGCGAGGATGAGGGTCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAAGGGTGAAACCGCAGAGCGGT                                                                        <  1:1639071‑M2/100‑1 (MQ=255)
cTTATCCGCAGCGAGGATGAGGGTCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAAGGGTGAAACCGCAGAGCGGT                                                                        >  2:28052‑M2/1‑100 (MQ=255)
cTTATCCGCAGCGAGGATGAGGGTCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAAGGGTGAAACCGCAGAGCGGT                                                                        <  2:403266‑M2/100‑1 (MQ=255)
cTTATCCGCAGCGAGGATGAGGGTCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAAGGGTGAAACCGCAGAGCG                                                                          <  1:1317398‑M2/98‑1 (MQ=255)
 ttATCCGCAGCGAGGATGAGGGTCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAAGGGTGAAACCGCAGAGCGGTG                                                                       >  1:60694‑M2/1‑100 (MQ=255)
                                                              cACGCACCGCACCGTGAAGGGTGAAACCGCAGAGCGGTGcggtgcgtgaggcggtctgcttcgtcatagtgccagtgggtgaccagaccctcatcctcgc          <  1:740091‑M2/100‑62 (MQ=255)
                                                                 gcaccgcaccGTGAAGGGTGAAACCGCAGAGCGGTGcggtgcgtgaggcggtctgcttcgtcatagtgccagtgggtgaccagaccctcatcctcgct         <  1:823323‑M2/98‑63 (MQ=255)
                                                                  caccgcaccgTGAAGGGTGAAACCGCAGAGCGGTGcggtgcgtgaggcggtctgcttcgtcatagtgccagtgggtgaccagaccctcatcctcgctgcg      <  1:281072‑M2/100‑66 (MQ=255)
                                                                  caccgcaccgTGAAGGGTGAAACCGCAGAGCGGTGcggtgcgtgaggcggtctgcttcgtcatagtgccagtgggtgaccagaccctcatcctcgctgcg      <  2:320846‑M2/100‑66 (MQ=255)
                                                                  caccgcaccgTGAAGGGTGAAACCGCAGAGCGGTGcggtgcgtgaggcggtctgcttcgtcatagtgccagtgggtgaccagaccctcatcctcgctgcg      <  2:950366‑M2/100‑66 (MQ=255)
                                                                  caccgcaccgTGAAGGGTGAAAACGCAGAGCGGTGcggtgcgtgaggcggtctgcttcggcatagtgcccgtgggtgacaagaccctcatcctcgctgcg      <  2:562313‑M2/100‑66 (MQ=255)
                                                                    ccgcaccgTGAAGGGTGAAACCGCAGAGCGGTGcggtgcgtgaggcgctctgcttcgtcatagtgccagtgggtgaccagaccctcatcctcgctgcgga    <  2:933080‑M2/100‑68 (MQ=255)
                                                                      gcaccgTGAAGGGTGAAACCGCAGAGCGGTGcggtgcgtgaggcggtctgcttcgtcatagtgccagtgggtgaccagaccctcatcctcgctgcggata  <  1:1037806‑M2/100‑70 (MQ=255)
                                                                      |                                                                                                   
CTTATCCGCAGCGAGGATGAGGGTCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAAGGGTGAAACCGCAGAGCGGTGGCAGTATGACGAACGTGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGGCGGTGCA  >  NC_000913/3621244‑3621413

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.