| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4037476 | 13 (0.150) | 19 (0.220) | 9/174 | NT | 59.9% | intergenic (+141/‑43) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon |
| ? | NC_000913 | = 4037516 | NA (NA) | intergenic (+181/‑3) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon | |||||
GCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGAC > NC_000913/4037377‑4037575 | gCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTC < 2:885990‑M1/100‑1 (MQ=255)gCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTC < 2:2053706‑M1/100‑1 (MQ=255)gCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTC > 2:1222858‑M1/1‑100 (MQ=255)gCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTC > 1:1196474‑M1/1‑100 (MQ=255) cACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACga > 1:1787258/1‑100 (MQ=33) aCTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgat > 1:1069944/1‑100 (MQ=33) cTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatg > 2:1914334/1‑100 (MQ=32) tGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatga < 2:58776/100‑1 (MQ=33) gCGAAGTTTTGCCCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatgat > 2:876641/1‑100 (MQ=17) cGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGatgatg < 2:1501346/100‑1 (MQ=32) cGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGatgatg < 1:784669/100‑1 (MQ=33) gAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGAtgatga > 1:1560527/1‑100 (MQ=35) gAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGAtgatga < 2:502762/100‑1 (MQ=33) gAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGAtgatga < 2:2397412/100‑1 (MQ=33) gTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATc < 2:348081/100‑1 (MQ=31) gTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATc < 2:189157/100‑1 (MQ=31) ttttGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCg < 1:1156326/100‑1 (MQ=11) tGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCgcaacccgaagatgtttctttc > 2:2288204‑M1/1‑78 (MQ=255) tCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCacaacccgaagatgtttctttcgattcatcatcgt < 1:1364347‑M1/100‑36 (MQ=255) tgtaacaagctGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCgcaacccgaagatgtttctttcgattcatcatcgtgt < 1:2123‑M1/95‑38 (MQ=255) tGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCacaacccgaagatgtttctttcgattcatcatcgtgt < 1:972488‑M1/100‑38 (MQ=255) gATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCgcaacccgaagatgtttcttgcgatccatcatcgtgttg < 1:1429228‑M1/100‑40 (MQ=255) aTCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCgcaacacgaagatgtttcttacgattcatcatcgtgttgc < 2:1582176‑M1/100‑41 (MQ=255) acaAGCTGAAAATTGAAACTCTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCgcaacccgaagatgtttctttcgattcatcatcgtgttgc < 1:1335933‑M1/98‑41 (MQ=255) acaAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCgcaacccgaagatgtttctttcgattcatcatcgtgttgcg < 2:807198‑M1/99‑42 (MQ=255) aaGCTGAAAATTTAAACACTGAACAACGATAGTTGTTCGTGAGTCTCTCAAATTTTCacaacccgaagatgtttctttcgattcatcatcgtgttgcgaa < 1:652293‑M1/100‑44 (MQ=255) aaGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCgcaacccgaagatgtttctttcgattcatcatcgtgttgcgaa < 1:2288230‑M1/100‑44 (MQ=255) aGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaa < 2:239530‑M1/100‑45 (MQ=255) gCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaa < 1:198962‑M1/100‑46 (MQ=255) cTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCgcaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaat < 2:1529269‑M1/100‑47 (MQ=255) aaaaTTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttg < 2:1341547‑M1/100‑50 (MQ=255) aaaaTTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttg < 2:562507‑M1/100‑50 (MQ=255) aaaaTTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttg < 1:1181573‑M1/100‑50 (MQ=255) aTTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgaga < 2:231808‑M1/100‑53 (MQ=255) ttGAAACACTGAACAAGGAAAGTTGTTCTTGATTCTCTCAAATTTTCacaacccgaagatgtttctttcgattcatcattgtgttgcgaaaatttgaga < 2:2271268‑M1/99‑53 (MQ=255) ttGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagag < 2:237706‑M1/100‑54 (MQ=255) tCacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttg > 1:2337524‑M1/1‑2 (MQ=255) cacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttga > 1:1945450‑M1/1‑1 (MQ=255) cacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttga > 2:78164‑M1/1‑1 (MQ=255) cacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttga > 1:1723537‑M1/1‑1 (MQ=255) cacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttga < 1:1006441‑M1/100‑100 (MQ=255) | GCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGAC > NC_000913/4037377‑4037575 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |