New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 226565	NA (NA)	4 (0.050)	3/166	NT	NA	noncoding (807/2904 nt)	rrlH	23S ribosomal RNA of rrnH operon
	?	NC_000913	= 226578	NA (NA)					noncoding (820/2904 nt)	rrlH	23S ribosomal RNA of rrnH operon

TGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCG  >  NC_000913/226505‑226662                                                             |                                                                                                  tGAAAAATTAGGGGATAACTTGTGGATGGGGGTGAAAGGCCGATCAAACCGGGAGATAGCTGGTTATCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAAc                                                            <  1:427554/100‑1 (MQ=11) tGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAAc                                                            <  2:175252/100‑1 (MQ=11) tGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAAc                                                            >  2:2287313/1‑100 (MQ=11) tGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAAc                                                            <  2:857384/100‑1 (MQ=11)  gAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATATAAGTAGCGCCACGTGAACt                                                           >  1:858380/1‑100 (MQ=255)   aaaaaTTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTc                                                          >  2:845939/1‑100 (MQ=32)   aaaaaTTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTc                                                          <  1:353120/100‑1 (MQ=32)       aTTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCAtct                                                      >  2:307119/1‑100 (MQ=33)            cGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCggg                                                 <  1:220879/100‑1 (MQ=33)            cGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCggg                                                 <  2:1059689/100‑1 (MQ=33)             ggATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCgggg                                                <  2:852206/100‑1 (MQ=33)             ggATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCggg                                                 >  1:2147522/1‑99 (MQ=32)              gATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCggggg                                               >  2:2346681/1‑100 (MQ=33)                 gACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTag                                            <  2:1775416/100‑1 (MQ=33)                  aCTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTaga                                           <  1:1798308/100‑1 (MQ=33)                  aCTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTaga                                           <  2:1420150/100‑1 (MQ=33)                  aCTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTaga                                           >  2:1866608/1‑100 (MQ=32)                   cTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTagag                                          >  2:907458/1‑100 (MQ=33)                   cTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTagag                                          <  2:1428387/100‑1 (MQ=33)                      gtgGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCAc                                       <  1:1243077/100‑1 (MQ=33)                        ggCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTg                                     <  2:123226/100‑1 (MQ=33)                            gggggTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTc                                 >  2:777567/1‑100 (MQ=33)                             ggggTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCg                                <  2:1345476/100‑1 (MQ=33)                              gggTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCgg                               >  2:1467218/1‑100 (MQ=33)                                    aaGGCCATTCAAACCGGGAGATAGCTGATTCTCCCCGAAAGGTCTTTAGTTAGCTCCTCGTGAACTTATCTCCGGCGGTAGAGCACTGTTTCGGCAAggg                         >  2:317464/1‑100 (MQ=11)                                    aaGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAggg                         >  1:1323780/1‑100 (MQ=33)                                      ggCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAggggg                       >  2:951829/1‑100 (MQ=33)                                        ccAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTc                     <  1:1830632/100‑1 (MQ=33)                                             cAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGAGGGTCATccc                >  1:24754/1‑100 (MQ=17)                                              aaaCCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCg               >  2:1639033/1‑100 (MQ=33)                                              aaaCCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCg               >  1:902018/1‑100 (MQ=33)                                                aCCGGGCGATAGCTGGTACTCACCGAAAGCTACTTAGGAAGCGCCTCGTGAACTCATCTCCGGGGGCCGAGCACTGTCTCGGCAACGGGGCCATCACGAc             >  2:1318608/1‑100 (MQ=255)                                                 ccGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACt            <  2:1339185/100‑1 (MQ=33)                                                 ccGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACt            >  2:1015358/1‑100 (MQ=33)                                                 ccGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACt            <  1:1423339/100‑1 (MQ=33)                                                   gggAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACtt           <  2:1622879/99‑1 (MQ=33)                                                      agaTAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCa       <  1:974589/100‑1 (MQ=32)                                                       gaTAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCaa      >  2:1293619/1‑100 (MQ=33)                                                        aTAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAAc     <  1:672655/100‑1 (MQ=33)                                                         tAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCCTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGCCATCCCGACTTACCAAc     >  2:1344410/1‑99 (MQ=12)                                                         tAGCTGGTCCTCACCGAAAGCTATTGAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCAACCCGACTTACCAAcc    <  2:1620835/100‑1 (MQ=11)                                                           gCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCg  >  1:1357437/1‑100 (MQ=33)                                                            cTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAAccc   >  2:622193/1‑98 (MQ=33)                                                             |                                                                                                  TGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCG  >  NC_000913/226505‑226662

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.