New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	729837 =	NA (NA)	10 (0.120)	7/172	NT	NA	coding (255/4194 nt)	rhsC	Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
	?	NC_000913	729868 =	NA (NA)					coding (286/4194 nt)	rhsC	Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor

GCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGC  >  NC_000913/729738‑729898                                                                                                    |                                                              gctCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACg                                                               >  1:1186361/1‑100 (MQ=32) gctCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACg                                                               <  1:2365884/100‑1 (MQ=33) gctCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACg                                                               >  1:1271709/1‑100 (MQ=33)   tCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCAACTACTGCAGTTACCGGACAAAAACGcc                                                             <  2:863542/100‑1 (MQ=12)    cGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCACTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGccc                                                            >  2:2154463/1‑100 (MQ=18)     ggTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCGTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCcg                                                           <  1:1684054/100‑1 (MQ=18)         cAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCgcgc                                                        >  2:811318/1‑99 (MQ=33)         cAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGcc                                                       <  1:989932/100‑1 (MQ=33)          aaaGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCg                                                      >  2:990204/1‑100 (MQ=33)              gttcTTCCCGCTTAAGCCGACATCGCCTTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTgg                                                  <  1:2321126/97‑1 (MQ=11)              gTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTgg                                                  <  1:1964915/100‑1 (MQ=32)              gTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTgg                                                  <  1:932408/100‑1 (MQ=32)               tCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTgg                                                  <  1:1208994/99‑1 (MQ=32)                ccTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTgggg                                                <  2:1725442/100‑1 (MQ=33)                 cTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTCCAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGa                                               >  2:1523184/1‑100 (MQ=18)                  ttCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAg                                              >  1:2393286/1‑100 (MQ=33)                     ccGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCt                                           >  2:617785/1‑100 (MQ=33)                        gTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCgg                                        <  1:1200693/100‑1 (MQ=33)                         tGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGc                                       <  2:1513619/100‑1 (MQ=32)                         tGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGc                                       <  1:2386526/100‑1 (MQ=33)                          gAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGcc                                      <  2:2393258/100‑1 (MQ=33)                            aaCCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGcccc                                    >  2:1862519/1‑100 (MQ=33)                              ccGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGGACACAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCgg                                  >  1:576920/1‑100 (MQ=18)                              ccGACATCGCCCTGCCCGCCCCGCGGCCGTTCATTCTCTCCCGCACCTACAGCATTTACCGGACTAAAAATACCGCGCTGGTGGGGAGCATCGGCCCCgg                                  <  2:956278/100‑1 (MQ=11)                                gACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCt                                >  2:1297668/1‑100 (MQ=33)                                 aCATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTg                               <  1:1941425/100‑1 (MQ=33)                                  cATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTgg                              <  2:2094736/100‑1 (MQ=33)                                    tCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGaa                            <  1:1297682/100‑1 (MQ=32)                                     cGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGaaa                           <  2:1413395/100‑1 (MQ=32)                                      gCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTCCAGCAGTTACCGGACAAAAACGCCCCCGCCGGTGGGGAGCCTCAGACCCGGCTGAaaaa                          >  1:1997695/1‑100 (MQ=11)                                          tGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGcc                      <  1:1262701/100‑1 (MQ=33)                                           gcccggcccgCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGTCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGcc                      <  2:2163755/99‑1 (MQ=17)                                           gcccggcccgCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCt                     >  1:959105/1‑100 (MQ=33)                                            cccggcccgCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTg                    >  2:1509217/1‑100 (MQ=33)                                             ccggcccgCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGc                   <  1:1435507/100‑1 (MQ=32)                                              cggcccgCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGTACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCcgcg                  >  2:1564058/1‑100 (MQ=12)                                                gcccgCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGa                <  1:551350/100‑1 (MQ=33)                                                gcccgCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGa                <  1:1335461/100‑1 (MQ=33)                                                      tGCCGTTCATTCTCTCCCTCACCTTCGGCAGTTACCGGACAAGAACTCTCGCGCCGGTGGGGAGCCTCGGTCCTGGCTTGATAGTGCTTGCGGATATCCg          <  2:773480/100‑1 (MQ=11)                                                       gCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGc         >  1:367033/1‑100 (MQ=33)                                                         cGTTCATTCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCtt       >  2:1665540/1‑100 (MQ=33)                                                         cGTTCATTCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCtt       <  2:340372/100‑1 (MQ=32)                                                          ccgatctctctcCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTa      <  2:2396261/94‑1 (MQ=2)                                                            tCATTCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACa    >  2:1235028/1‑100 (MQ=32)                                                              aTTCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCCCTTACAGc  >  2:2076772/1‑100 (MQ=17)                                                               ttCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGc  <  1:193972/99‑1 (MQ=31)                                                               ttCTCTCCCGCACCTACAGCAATTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGc  >  2:952698/1‑99 (MQ=14)                                                                                                    |                                                              GCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATTCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGC  >  NC_000913/729738‑729898

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.