New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2340364NA (NA)5 (0.060) 5/164 NT NA noncoding (52/82 nt) REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 3984220 = NA (NA)noncoding (1/104 nt) RIP287 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP287 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

ATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAACCCTGCCGTCTGGGCAAAAT  >  NC_000913/2340266‑2340463
                                                                                                  |                                                                                                   
aTGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGg                                                                                                    >  2:1647397‑M1/1‑99 (MQ=255)
 tgctgcACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGgc                                                                                                   >  1:606030‑M1/1‑98 (MQ=255)
  gctgcACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGgcc                                                                                                  >  1:631244‑M1/1‑97 (MQ=255)
  gctgcACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGgcc                                                                                                  >  1:1992103‑M1/1‑97 (MQ=255)
    tgcACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGgctgg                                                                                                >  1:2003844‑M1/1‑95 (MQ=255)
    tgcACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGgccgg                                                                                                <  2:762599‑M1/100‑6 (MQ=255)
     gcACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGTGTCTTCTCAGGCCTACAAATGCTCCCCGTAGgccgga                                                                                               >  2:1616755‑M1/1‑94 (MQ=255)
      cacaCGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGgccggat                                                                                              <  1:926735‑M1/100‑8 (MQ=255)
        cacGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATaa                                                                                            >  2:2262803/1‑100 (MQ=255)
        cacGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATaa                                                                                            >  1:1653527/1‑100 (MQ=255)
          cGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTATGCCGGATaa                                                                                            >  1:809681/1‑98 (MQ=255)
          cGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAgg                                                                                          >  1:471050/1‑100 (MQ=255)
              gAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCg                                                                                        >  2:597063/1‑98 (MQ=255)
                   aGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTAcgc                                                                                 <  1:413843/100‑1 (MQ=255)
                    gTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTAcgcc                                                                                <  2:606027/100‑1 (MQ=255)
                    gTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTAcgcc                                                                                <  2:911605/100‑1 (MQ=255)
                     tGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCACGCCTACAAATGCTCCCCGTAGTCGGGATAAGGCGTTTAcgccg                                                                               >  1:751977/1‑100 (MQ=255)
                     tGAAGTTGATGTTTGGCCGCGCCAATTCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCTTATGCCGGATAAGGCGTTTAcgccg                                                                               <  2:186873/100‑1 (MQ=37)
                          ttGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGgccggatgcggcgtaaacgccttatcc                                                                          <  1:411573‑M1/100‑28 (MQ=255)
                          ttGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGgccggatgcggcgtaaacgccttatc                                                                           <  1:863235‑M1/99‑27 (MQ=255)
                           tGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGgccggatgcggcgtaaacgccttatccg                                                                         <  1:1795236‑M1/100‑29 (MQ=255)
                            gATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCgg                                                                        <  1:1869935/100‑1 (MQ=255)
                             aTGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGgccggatgcggcgtaaacgccttatccggc                                                                       <  1:1329399‑M1/100‑31 (MQ=255)
                              tGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGgccggatgcggcgtaaacgccttatccggcc                                                                      <  1:213994‑M1/100‑32 (MQ=255)
                              tGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCa                                                                      >  1:2345010/1‑100 (MQ=255)
                              tGTTTGGCCGCGCCAATGCCTGATAAGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGACa                                                                      >  1:2039985/1‑100 (MQ=255)
                              tGTTTGGCCGAGCCAATGCCTGATGCGACGATTGCAGCGTCTGATCAGGCCTAAAAATGCTCCACGTAGGCCGGCGAATGCGTTAAAGCCGCATc                                                                           >  2:588997/1‑95 (MQ=21)
                               gTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCaa                                                                     >  1:1504833/1‑100 (MQ=255)
                                   ggCCGCGCCAATGCCTGATGCGACGCTTTCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGt                                                                 >  2:799834/1‑100 (MQ=255)
                                    gCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTg                                                                <  1:209196/100‑1 (MQ=255)
                                    gCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTg                                                                <  1:1084860/100‑1 (MQ=255)
                                    gCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTg                                                                >  2:1266608/1‑100 (MQ=255)
                                     ccGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGc                                                               <  1:2290504/100‑1 (MQ=255)
                                     ccGCGCCAATGCCTGATGCAACGCTAGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGAAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGc                                                               >  2:949423/1‑100 (MQ=255)
                                         gcCAATGCCTGATGCGACGCTTTCCGCGTCTTATCAGTCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGAc                                                           <  2:1612986/100‑1 (MQ=255)
                                         gcCAAGGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGAc                                                           <  2:1531070/100‑1 (MQ=255)
                                          ccAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACt                                                          >  1:2324543/1‑100 (MQ=255)
                                           cAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTa                                                         <  1:1722711/100‑1 (MQ=255)
                                           cAATGCCTGATGCGACGCGTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTa                                                         <  1:2247349/100‑1 (MQ=255)
                                              tGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGAc                                                      <  1:574074/100‑1 (MQ=255)
                                              tGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGAc                                                      <  1:512178/100‑1 (MQ=255)
                                               gCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACa                                                     <  1:395424/100‑1 (MQ=255)
                                                ccTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAg                                                    >  2:1247387/1‑100 (MQ=255)
                                                ccTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAg                                                    >  1:1416158/1‑100 (MQ=255)
                                                ccTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAg                                                    >  1:1416048/1‑100 (MQ=255)
                                                ccTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAg                                                    >  1:399895/1‑100 (MQ=255)
                                                  tGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTg                                                  <  1:85463/100‑1 (MQ=255)
                                                   gATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCGTCCGGCAACCGTGCCGACTAGACAGTGa                                                 <  2:418313/100‑1 (MQ=255)
                                                   gATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGa                                                 <  1:572272/100‑1 (MQ=255)
                                                   gATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGa                                                 <  1:902748/100‑1 (MQ=255)
                                                   gATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGa                                                 <  2:420904/100‑1 (MQ=255)
                                                   gATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGa                                                 <  1:902726/100‑1 (MQ=255)
                                                    aTGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGAt                                                >  2:2180421/1‑100 (MQ=255)
                                                    aTGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGAt                                                >  1:1782424/1‑100 (MQ=255)
                                                     tGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGAtt                                               >  1:1142891/1‑100 (MQ=255)
                                                      gCGACTCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGAtt                                               <  2:2258178/99‑1 (MQ=255)
                                                       cGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTAc                                             >  2:609788/1‑100 (MQ=255)
                                                        gACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTTCCGACTAGACAGTGATTAcc                                            <  2:426219/100‑1 (MQ=255)
                                                         aCGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCa                                           <  2:1362970/100‑1 (MQ=255)
                                                           gCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCAtt                                         <  1:1438242/100‑1 (MQ=255)
                                                             ttGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTc                                       <  1:1546911/100‑1 (MQ=255)
                                                               gCCGCGTCTTATCAGGGCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCAACCGTGCCGTCTAGACAGTGATTACCATTTCAc                                     <  2:2334758/100‑1 (MQ=255)
                                                               gCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCAc                                     >  1:1385649/1‑100 (MQ=255)
                                                                  gcgTCTTATCAGGCTTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCg                                   <  1:620670/99‑1 (MQ=255)
                                                                  gcgTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGt                                  <  2:399892/100‑1 (MQ=255)
                                                                     tCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCa                                <  1:409184/99‑1 (MQ=255)
                                                                      cTTATCAGGCCTACAACTGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATc                              <  2:2247007/100‑1 (MQ=255)
                                                                      cTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATc                              <  1:1381374/100‑1 (MQ=255)
                                                                      cTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATc                              >  2:320465/1‑100 (MQ=255)
                                                                      cTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATc                              >  1:503744/1‑100 (MQ=255)
                                                                       ttATCAGGCCTAAAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCg                             <  1:1960956/100‑1 (MQ=255)
                                                                        tATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGa                            >  1:2337536/1‑100 (MQ=255)
                                                                        tATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGa                            >  2:2147312/1‑100 (MQ=255)
                                                                           cAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACaa                         >  2:95213/1‑100 (MQ=255)
                                                                           cAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACaa                         <  2:1413879/100‑1 (MQ=255)
                                                                            aGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACaaa                        >  2:1064570/1‑100 (MQ=255)
                                                                              gCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACaaaaa                      >  1:736028/1‑100 (MQ=255)
                                                                               ccTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAAc                     >  1:1608555/1‑100 (MQ=255)
                                                                                cTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAAcc                    >  1:2121464/1‑100 (MQ=255)
                                                                                cTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAAcc                    <  2:2274603/100‑1 (MQ=255)
                                                                                cTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAAcc                    >  2:744983/1‑100 (MQ=255)
                                                                                 tACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAAccc                   >  1:492028/1‑100 (MQ=255)
                                                                                    aaaTGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAACCCTGc                >  1:1250524/1‑100 (MQ=255)
                                                                                    aaaTGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAACCCTGc                <  1:722055/100‑1 (MQ=255)
                                                                                      aTGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAACCCTGCCg              <  2:757486/100‑1 (MQ=255)
                                                                                      aTGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAACCCTGCCg              <  1:761247/100‑1 (MQ=255)
                                                                                        gCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAACCCTGCCGTc            >  1:988585/1‑100 (MQ=255)
                                                                                         ctcctcGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAACCCTGCCGTCt           <  1:1005415/100‑1 (MQ=255)
                                                                                         cTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAACCCTGCCGTCt           >  1:852101/1‑100 (MQ=255)
                                                                                         cTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAACCCTGCCGTCt           >  2:1732354/1‑100 (MQ=255)
                                                                                          tCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAACCCTGCCGTCTg          <  2:1142880/100‑1 (MQ=255)
                                                                                           ccccGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAACCCTGCCGTCTgg         <  2:646678/100‑1 (MQ=255)
                                                                                           ccccGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAACCCTGCCGTCTgg         >  1:1655210/1‑100 (MQ=255)
                                                                                           ccccGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAACCCTGCCGTCTgg         >  2:132324/1‑100 (MQ=255)
                                                                                             ccGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAACCCTGCCGTCTGGGc       <  1:29612/100‑1 (MQ=255)
                                                                                             ccGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCAACTAGACAGTAATTACCATTTCACCGTCATCGACAAAAACCCTGCCGTCTGGGc       <  2:1269962/100‑1 (MQ=255)
                                                                                               gTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAACCCTGCCGTCTGGGCaa     >  1:762757/1‑100 (MQ=255)
                                                                                                tAGgccggataaggcgtttacgccgcatccggcctacatgatcgtgcaaattcaataaattgcagcgttctgtaggctggataagatgcgtcagcatcgc    >  2:821198‑M1/1‑3 (MQ=255)
                                                                                                 aGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAACCCTGCCGTCTGGGCaaaa   <  2:1655190/100‑1 (MQ=255)
                                                                                                  ggCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAACCCTGCCGTCTGGGCAAAat  >  1:830817/1‑100 (MQ=255)
                                                                                                  |                                                                                                   
ATGCTGCACACGCAGAATAAGTGAGGTTGATGTTTGGCCGCGCCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAATGCTCCCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCGTGCCGACTAGACAGTGATTACCATTTCACCGTCATCGACAAAAACCCTGCCGTCTGGGCAAAAT  >  NC_000913/2340266‑2340463

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.