New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3281702 =NA (NA)3 (0.040) 3/164 NT NA noncoding (1/82 nt) REP239 (repetitive extragenic palindromic) element; contains 2 REP sequences REP239 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 3281734 = NA (NA)noncoding (33/82 nt) REP239 (repetitive extragenic palindromic) element; contains 2 REP sequences REP239 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 148 total aligned reads displayed.

AGGGTCAATTAGCTTCGTTTTGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTT  >  NC_000913/3281603‑3281801
                                                                                                   |                                                                                                   
aGGGTCAATTAGCTTCGTTTTGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGgtg                                                                                                     <  2:266685/100‑1 (MQ=255)
 gggTCAATTAGCTTCGTTTTGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGgtgt                                                                                                    >  2:382107/1‑100 (MQ=255)
 cgaaatttgtgatcgttgaaagaaaagataaaggaagcaaaagggattgctggatgcggcgcaaacgctttatccggccttgcggtcaccaactgtagGt                                                                                                    <  1:268514‑M1/2‑1 (MQ=255)
    tCAATTAGCTTCGTTTTGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCgg                                                                                                 <  2:1316143/100‑1 (MQ=255)
    tCAATTAGCTTCGTTTTGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCgg                                                                                                 <  2:2140518/100‑1 (MQ=255)
    aatttgtgatcgttgaaagaaaagataaaggaagcaaaagggattgctggatgcggcgcaaacgctttatccggccttgcggtcaccaactgtagGTCgg                                                                                                 >  1:1286572‑M1/96‑100 (MQ=255)
     cAATTAGCTTCGTTTTGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGa                                                                                                >  2:1747367/1‑100 (MQ=255)
     atttgtgatcgttgaaagaaaagataaaggaagcaaaagggattgctggatgcggcgcaaacgctttatccggccttgcggtcaccaactgtagGTCGGa                                                                                                <  1:463988‑M1/6‑1 (MQ=255)
           gCTTCGTTTTGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGAc                                                                                          <  1:859477/100‑1 (MQ=255)
            cTTCGTTTTGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACg                                                                                         <  1:534121/100‑1 (MQ=255)
            cTTCGTTTTGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTACAGCGGTGTCGGATTCGa                                                                                           >  1:731548/1‑98 (MQ=255)
             ttCGTTTTGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGc                                                                                        <  1:997081/100‑1 (MQ=255)
             ttCGTTTTGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGc                                                                                        >  1:1472128/1‑100 (MQ=255)
             ttCGTTTTGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGc                                                                                        <  1:960086/100‑1 (MQ=255)
              tCGTTTTGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCt                                                                                       <  1:1179940/100‑1 (MQ=255)
                gTTTTGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTaa                                                                                     >  1:1678107/1‑100 (MQ=255)
                gTTTTGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTaa                                                                                     >  2:690822/1‑100 (MQ=255)
                    tGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAAcgcg                                                                                 >  1:240209/1‑100 (MQ=255)
                      aTAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTc                                                                               <  2:327576/100‑1 (MQ=255)
                      aTAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTc                                                                               >  2:1084893/1‑100 (MQ=255)
                       tAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAGGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTTGGATGCGACGCTAACGCGTCt                                                                              <  2:715070/100‑1 (MQ=255)
                       tAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCt                                                                              <  1:2299445/100‑1 (MQ=255)
                        aGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCtt                                                                             <  1:2102150/100‑1 (MQ=255)
                         gTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTa                                                                            <  1:738716/100‑1 (MQ=255)
                         gTTTGCTCCTTTATTGGGCCTTAACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGAAGCTAACGCGTCTTa                                                                            >  2:882709/1‑100 (MQ=255)
                          cgaaagaaaaagaaaggccttacgggggaagtgaaggccTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTAt                                                                           >  1:1520649‑M2/40‑100 (MQ=255)
                           ttGCTCCTTTATTGGGCCTTTACTTTCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGCTGTCGCATGTGACGCTAACGCGTCTTATc                                                                          <  2:384572/100‑1 (MQ=255)
                            tGCTCTTTTATTTGGCCTTCACTTCCCCCTTAAGGCCTTTTTTTTTCTTTCTTTTTGATTTGTGCTGCGGTGTCGGATGCGTCGCTAACGCGTCTTATcc                                                                         <  2:1542155/100‑1 (MQ=255)
                            tGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATcc                                                                         >  1:281145/1‑100 (MQ=255)
                            tGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATcc                                                                         >  2:1714882/1‑100 (MQ=255)
                              cTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCTGATGCGCCGCTAACGCGTCTTATCCGa                                                                       >  2:2284295/1‑100 (MQ=255)
                              cTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGa                                                                       >  2:318129/1‑100 (MQ=255)
                                ccTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGAcc                                                                     <  1:2298093/100‑1 (MQ=255)
                                ccTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGAcc                                                                     <  2:1414636/100‑1 (MQ=255)
                                 ggaagcaaaaggaattgctggatgcggcgcaaacgctttatccggccttgcgttcaccaactgtagGTCGGATGCGACGCTAACGCGTCTTATCCGACCt                                                                    >  1:1180430‑M1/67‑100 (MQ=255)
                                 cTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGAcc                                                                     <  1:220449/99‑1 (MQ=255)
                                  tttATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTa                                                                   <  2:746493/100‑1 (MQ=255)
                                   ttATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTAc                                                                  <  1:41161/100‑1 (MQ=255)
                                      ttGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGt                                                               <  1:1370961/100‑1 (MQ=255)
                                      aaaggccttacgggggaagtgaaggccTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGt                                                               >  1:1874099‑M2/28‑100 (MQ=255)
                                       tGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGtt                                                              >  1:2009630/1‑100 (MQ=255)
                                        gggCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGtt                                                              >  2:1405439/1‑99 (MQ=255)
                                         GGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTgg                                                            <  2:1520290‑M1/100‑1 (MQ=255)
                                          gccttacgggggaagtgaaggccTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGt                                                           >  2:534478‑M2/24‑100 (MQ=255)
                                          GCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGt                                                           >  2:599955‑M1/1‑100 (MQ=255)
                                          GCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGt                                                           <  1:1981216‑M1/100‑1 (MQ=255)
                                          GCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGt                                                           >  1:119378‑M1/1‑100 (MQ=255)
                                          GCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCATTCGTTTTGATCTGTTCAGCGGTATCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGt                                                           <  2:1020166‑M1/100‑1 (MQ=255)
                                           CCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTg                                                          <  1:1079119‑M1/100‑1 (MQ=255)
                                           CCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTg                                                          <  2:911917‑M1/100‑1 (MQ=255)
                                           CCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTg                                                          <  1:46658‑M1/100‑1 (MQ=255)
                                              TCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGAcc                                                       <  1:2389582‑M1/100‑1 (MQ=255)
                                               cACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCg                                                      >  1:1435127/1‑100 (MQ=255)
                                               cACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCg                                                      >  1:1684758/1‑100 (MQ=255)
                                                aCTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGc                                                     <  1:851521/100‑1 (MQ=255)
                                                aCTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGc                                                     >  1:1454618/1‑100 (MQ=255)
                                                 cTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCg                                                      <  1:153521/98‑1 (MQ=255)
                                                 cTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCa                                                    >  2:1872721/1‑100 (MQ=255)
                                                  ttCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCaa                                                   <  2:1904531/100‑1 (MQ=255)
                                                     ccccGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAg                                                  >  1:1368699/1‑98 (MQ=255)
                                                      cccGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGcc                                               >  1:637047/1‑100 (MQ=255)
                                                      cccGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGcc                                               >  2:1642529/1‑100 (MQ=255)
                                                      cccGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTATGCAGCGGTGTCGGATGCGACGCTACCGCGTCTTATCCGTCCTACAGTTGGTGACCGCAAggac                                               <  2:2155291/100‑3 (MQ=38)
                                                        cGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCgg                                             <  1:1897970/100‑1 (MQ=255)
                                                         gTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGa                                            <  1:968761/100‑1 (MQ=255)
                                                           aaggccTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATa                                          <  1:1219153‑M2/94‑1 (MQ=255)
                                                           aaggccTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATa                                          >  2:744625‑M2/7‑100 (MQ=255)
                                                              gccTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAg                                       >  2:1468490‑M2/4‑100 (MQ=255)
                                                               ccTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGc                                      >  2:949236‑M2/3‑100 (MQ=255)
                                                                cTTTCTTTTTCTTTCGTTTTGCTCTGTGCAGCGGTCTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCg                                     <  2:1344287‑M2/99‑1 (MQ=255)
                                                                   tctttttctttCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGttt                                  <  1:1548750/100‑1 (MQ=255)
                                                                   tctttttctttCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGttt                                  >  2:616865/1‑100 (MQ=255)
                                                                    ctttttctttCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTg                                 <  1:337952/100‑1 (MQ=255)
                                                                       tttctttcGTTTTGATCTGTGCAGCGGTGTCGGGTGCGACGCTAACGCGTCTTATGCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTgcgc                              >  1:573080/1‑100 (MQ=255)
                                                                       tttctttcGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGGGTCTTATCCGACCTACAGGTGGTGACCGCAAGGCCGGATAAAGCGTTTgcgc                              >  1:1779179/1‑100 (MQ=255)
                                                                       tttctttcGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTgcgc                              <  2:1583897/100‑1 (MQ=255)
                                                                       tttctttcGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTgcgc                              <  2:1904063/100‑1 (MQ=255)
                                                                          ctttcGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGcgccgc                           >  1:152864/1‑100 (MQ=255)
                                                                          ctttcGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGcgccgc                           >  1:1167008/1‑100 (MQ=255)
                                                                          ctttcGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAAGCCGGATAAAGCTTTTGcgccgc                           >  2:1578208/1‑100 (MQ=255)
                                                                          ctttcGTTTTGATCTATGCAGCGGAGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCCCAAGGCCGGATAAAGCGTTTGcgccgc                           >  2:2232604/1‑100 (MQ=255)
                                                                           tttcGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCa                          <  1:1110721/100‑1 (MQ=255)
                                                                           tttcGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCa                          <  2:2115732/100‑1 (MQ=255)
                                                                             tcGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATc                        <  2:951035/100‑1 (MQ=255)
                                                                                 tttGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGc                    <  1:1850808/100‑1 (MQ=255)
                                                                                 tttGATCTGTGCAGCGGTGTCGGATGAGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGTGCCGCATCCAGc                    >  2:1269796/1‑100 (MQ=255)
                                                                                   tGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCaa                  >  1:1268262/1‑100 (MQ=255)
                                                                                     aTCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATc                <  2:1607478/100‑1 (MQ=255)
                                                                                      tCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATcc               <  1:1419161/100‑1 (MQ=255)
                                                                                      tCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATcc               <  2:1074451/100‑1 (MQ=255)
                                                                                         gtgCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCtt            >  2:1771317/1‑100 (MQ=255)
                                                                                         gtgCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCtt            >  2:2262579/1‑100 (MQ=255)
                                                                                         gtgCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCtt            >  1:600115/1‑100 (MQ=255)
                                                                                          tgCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCttt           >  2:1019012/1‑100 (MQ=255)
                                                                                           gCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCtttt          <  2:668918/100‑1 (MQ=255)
                                                                                            cAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCTGCATCCAGCAATCCCTTTTg         <  2:273454/100‑1 (MQ=255)
                                                                                            cAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTg         >  2:1263188/1‑100 (MQ=255)
                                                                                            cAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAAGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTg         >  2:1483027/1‑100 (MQ=255)
                                                                                                ggTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTc     >  1:2236188/1‑100 (MQ=255)
                                                                                                 gtgtCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTcc    <  2:2230841/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
AGGGTCAATTAGCTTCGTTTTGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTT  >  NC_000913/3281603‑3281801

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.