New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3336878 =NA (NA)7 (0.090) 5/168 NT NA intergenic (‑75/+85) ibaG/mlaB acid stress protein; putative BolA family transcriptional regulator/ABC transporter maintaining OM lipid asymmetry, cytoplasmic STAS component
?NC_000913 3336905 = NA (NA)intergenic (‑102/+58) ibaG/mlaB acid stress protein; putative BolA family transcriptional regulator/ABC transporter maintaining OM lipid asymmetry, cytoplasmic STAS component

Only 100 of 146 total aligned reads displayed.

CGCTCTGAATTTCATTATTTTCCATGGGATCTTCAATCATCAGTTAATAAACCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAG  >  NC_000913/3336779‑3336974
                                                                                                   |                                                                                                
cgaaattgtataatttgcctgctgatgttctgcctcgttaaattttttcaggccggatatggcgttaaccgcctgtccggcaaacctgcctgcaagtcga                                                                                                  <  2:123117‑M1/1‑1 (MQ=255)
cgaaattgtataatttgcctgctgatgtgctgcctctttaaattttttcaggccggatatggcgttaaccgcctgtccggcaaacctgcctgcaagtcga                                                                                                  >  2:611579‑M1/100‑100 (MQ=255)
cGCTCTGAATTTCATTATTTTCCATGGGATCTTCAATCATCAGTTAATAAACTAGCGACACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCaaaaa                                                                                                  >  2:2294454/1‑100 (MQ=255)
cGCTCTGAATTTCATTATTTTCCATGGGATCTTCAATCATCAGTTAATAAACCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCaaaaa                                                                                                  <  1:992615/100‑1 (MQ=255)
cGCTCTGAATTTCATTATTTTCCATGGGATCTTCAATCATCAGTTAATAAACCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCaaaaa                                                                                                  <  1:572278/100‑1 (MQ=255)
 gCTCTGAATTTCATTATTTTCCATGGGATCTCCAATCATCAGTTAATAAACCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAg                                                                                                 <  2:713430/100‑1 (MQ=255)
   aattgtataatttgcctgctgatgttctgcctcgttaaattttttcaggccggatatggcgttaaccgcctgtccggcaaacctgcctgcaagtcgAGcc                                                                                               >  2:243588‑M1/97‑100 (MQ=255)
    attgtataatttgcctgctgatgttctgcctcgttaaattttttcaggccggatatggcgttaaccgcctgtccggcaaacctgcctgcaagtcgAGCCt                                                                                              >  2:1770486‑M1/96‑100 (MQ=255)
      gAATTTCATTATTTTCCATGGGATCTTCAATCATCAGTTAATAAACCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCg                                                                                            >  1:1098434/1‑100 (MQ=255)
      gAATTTCATTATTTTCCATGGGATCTTCAATCATCAGTTAATAAACCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCg                                                                                            >  2:268342/1‑100 (MQ=255)
        aTTTCATTATTTTCCATGGGATCTTCAATCATCAGTTAATAAACCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCt                                                                                          >  1:645214/1‑100 (MQ=255)
        aTTTCATTATTTTCCATGGGATCTTCAATCATCAGTTAATAAACCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAAAAAAAAGCCTCGCt                                                                                          <  2:928161/100‑1 (MQ=255)
           tCATTATTTTCCATGGGATCTTCAATCATCAGTTAATAAACCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGAt                                                                                       <  1:1279917/100‑1 (MQ=255)
           tCATTATTTTCCATGGGATCTTCAATCATCAGTTAATAAACCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGAt                                                                                       >  1:550531/1‑100 (MQ=255)
            cATTATTTTCCATGGGATCTTCAATCATCAGTTAATAAACCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATa                                                                                      <  1:1359303/100‑1 (MQ=255)
            cATTATTTTCCATGGGATCTTCAATCATCAGTTAATAAACCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATa                                                                                      >  1:1972507/1‑100 (MQ=255)
              ttagtTTCCATGGGAGCTTCAATCATCAGTTAATAAACCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATaaa                                                                                    <  1:1033416/100‑1 (MQ=255)
                 ttttCCATGGGATCTTCAATCATCAGTTAATAAACCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCa                                                                                 <  2:1721700/100‑1 (MQ=255)
                  tttCCATGGGATCTTCAATCATCAGTTAATAAACCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAg                                                                                <  1:240826/100‑1 (MQ=255)
                   ttCCATTTGATCTTCAATCATCAGTTAATAAAACAGCGAAACATCTTAGGACAAAGTTGAGCGAGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGa                                                                               <  2:1184070/100‑1 (MQ=255)
                    tCCATGGGATCTTCAATCATCAGTTAATAAACCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGAc                                                                              <  2:548309/100‑1 (MQ=255)
                       aTGGGATCATCAATCATCAATTAACAAACCAGCGAAACATCTTAGAGCAAAGTTGCGCTGAAAAAAAAAAAAAAAAAGCCTCGCTGATAAATCa                                                                                 <  2:2256763/94‑1 (MQ=255)
                         gggATCTTCAATCATCAGTTAATAAACCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGc                                                                         >  1:268865/1‑100 (MQ=255)
                         gggATCTTCAATCATCAGTTAATAAACCAGCGAAACATCCTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAg                                                                           <  1:1717024/98‑1 (MQ=255)
                          gttctgcctcgttaaattttttcaggccggatatggcgttaaccgcctgtccggcaaacctgcctgcaagtcgAGCCTCGCTGATAAATCAGACAAGGCt                                                                        >  2:906955‑M1/74‑100 (MQ=255)
                          ggATCTTCAATCATCAGTTAATAAACTAGCGAAACATCTTAGAGCAAAGTTGCGCTGTCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACaa                                                                            <  2:1285738/96‑1 (MQ=255)
                           ttctgcctctttaaattttttcaggccggatatggcgttaaccgcctgtccggcaaacctgcctgcaagtcgAGCCTCGCTGATAAATCAGACAAGGCTc                                                                       >  1:100453‑M1/73‑100 (MQ=255)
                           gATCTTCAATCATCAGTTAATAAACCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTc                                                                       >  2:1669626/1‑100 (MQ=255)
                            tctgcctcgttaaattttttcaggccggatatggcgttaaccgcctgtccggcaaacctgcctgcaagtcgAGCCTCGCTGATAAATCAGACAAGGCTCg                                                                      >  1:279356‑M1/72‑100 (MQ=255)
                            aTCTTCAATCATCAGTTAATAAACCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCg                                                                      <  1:1974730/100‑1 (MQ=255)
                             tCTTCAATCATCAGTTAATAAACCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGa                                                                     >  1:1285228/1‑100 (MQ=255)
                             ccgtctcggtaaattttttcaggccggatatggcgttaaccgcctgtccggcaaacctgcctgcaagttgAGCTTTGCTGATAAATCAGACAAggcgc                                                                       >  2:91367‑M1/71‑96 (MQ=255)
                               ttCAATCATCAGTTAATAAACCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACt                                                                   >  2:317481/1‑100 (MQ=255)
                                tCAATCATCAGTTAATAAACCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGAc                                                                    >  1:782481/1‑98 (MQ=255)
                                 cAATCATCAGTTAATAAACCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTg                                                                 <  2:236561/100‑1 (MQ=255)
                                   atcatcAGTTAATAAACCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTg                                                                 <  1:1205224/98‑1 (MQ=255)
                                   atcatcAGTGAATAAACCCGCGCAACATCCTAGAGGAAAGTTGCGGTACAATCAATAACCAAAAAACCCCACTGATAAATCAGACAAGGCTAGa                                                                     >  2:2359962/1‑94 (MQ=255)
                                     ttaaattttttcaggccggatatggcgttaaccgcctgtccggcaaacctgcctgcaagtcgAGCCTCGCTGATAAATCAGACAAGGCTCGACTTgcagg                                                             >  1:1589388‑M1/63‑100 (MQ=255)
                                     natcaGTTAATAAACCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTgcagg                                                             >  2:153327/2‑100 (MQ=255)
                                     catcaGTTAATAAACCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTgcagg                                                             <  2:2159428/100‑1 (MQ=255)
                                     catcaGTTAATAAACCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTgcagg                                                             >  2:405099/1‑100 (MQ=255)
                                     catcaGTTAATAAACCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTgcagg                                                             >  2:421355/1‑100 (MQ=255)
                                         aGTTAATAAACCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGcaggcagg                                                         <  1:1480240/100‑1 (MQ=255)
                                          gTTAATAAACCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGt                                                        >  1:123119/1‑100 (MQ=255)
                                          gTTAATAAACCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGt                                                        >  1:312078/1‑100 (MQ=255)
                                            tgataaACCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGttt                                                      >  1:1623752/3‑100 (MQ=255)
                                            taataaACCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGttt                                                      >  2:1971377/1‑100 (MQ=255)
                                            taataaACCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGtt                                                       >  2:1026779/1‑99 (MQ=255)
                                             aataaACCAGCGAAACATCTTAGATCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTg                                                     >  2:198400/1‑100 (MQ=255)
                                             aataaACCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAATGTTCGACTTGcaggcagg                                                         <  2:700101/96‑1 (MQ=255)
                                             aataaACCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTg                                                     >  1:1853931/1‑100 (MQ=255)
                                               taaACCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCTACTTGCAGGCAGGTTTGcc                                                   <  2:1246599/100‑1 (MQ=255)
                                               taaACCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGcc                                                   <  1:421358/100‑1 (MQ=255)
                                                 aaCCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCgg                                                 >  1:2183735/1‑100 (MQ=255)
                                                   ccAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGAc                                               <  2:2241625/100‑1 (MQ=255)
                                                     aGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAg                                             >  2:1334011/1‑100 (MQ=255)
                                                      gCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTTCAGGCAGGTTTGCTGGACAgg                                            >  2:826250/1‑100 (MQ=255)
                                                       cGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGc                                           <  1:978670/100‑1 (MQ=255)
                                                       cGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGc                                           >  2:604174/1‑100 (MQ=255)
                                                        gAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGAc                                               <  1:753932/95‑1 (MQ=255)
                                                        gAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCg                                          >  2:2025147/1‑100 (MQ=255)
                                                          aaCATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGt                                        <  1:1124126/100‑1 (MQ=255)
                                                          aaCATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGAAAAGGCTAGACTTGCCGGCAGGTTTGCCGGACaggagg                                         >  1:1943178/1‑99 (MQ=255)
                                                           aCATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGtt                                       <  1:376379/100‑1 (MQ=255)
                                                           aCATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGtt                                       <  2:1837242/100‑1 (MQ=255)
                                                              tCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAAc                                    <  1:1821317/100‑1 (MQ=255)
                                                                ttAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGc                                  <  2:1572226/100‑1 (MQ=255)
                                                                 tAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGcc                                 >  1:2289886/1‑100 (MQ=255)
                                                                 tAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGcc                                 <  2:943398/100‑1 (MQ=255)
                                                                   gagCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCat                               >  1:1117718/1‑100 (MQ=255)
                                                                   gagCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCa                                >  2:1184876/1‑99 (MQ=255)
                                                                     gCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCatat                             >  2:1626713/1‑100 (MQ=255)
                                                                       aaaGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATcc                           <  1:1480207/100‑1 (MQ=255)
                                                                         aGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCgg                         <  1:1790182/100‑1 (MQ=255)
                                                                           ttGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGcc                       <  1:1643360/100‑1 (MQ=255)
                                                                            tGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCt                      <  1:926346/100‑1 (MQ=255)
                                                                             gcgcTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGAATTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTg                     >  2:2024806/1‑100 (MQ=255)
                                                                              cgcTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGa                    >  1:1975116/1‑100 (MQ=255)
                                                                              cgcTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGa                    >  2:271302/1‑100 (MQ=255)
                                                                              cgcTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGATCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCGGa                    >  2:541762/1‑100 (MQ=255)
                                                                               gcTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGaa                   <  2:1943156/100‑1 (MQ=255)
                                                                                  ggCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGaaaaa                >  2:523300/1‑100 (MQ=255)
                                                                                   gCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGaaaaaa               >  2:1418454/1‑100 (MQ=255)
                                                                                   gCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGaaaaaa               <  1:1399510/100‑1 (MQ=255)
                                                                                   gCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGaaaaaa               >  2:1418238/1‑100 (MQ=255)
                                                                                    cATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAAt              <  1:1663918/100‑1 (MQ=255)
                                                                                      taaataaGCAAAAAGCCTCGCTGATAAATCAGACAAGACTCGACTTGCAGGCAGGTTTGCCGTACAGGCGGTTAACGCCATATCCGGCCTGAAAAAAttt            <  2:2136043/100‑1 (MQ=255)
                                                                                        aataaGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTaa          >  1:2038530/1‑100 (MQ=255)
                                                                                        aataaGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTaa          >  1:2208297/1‑100 (MQ=255)
                                                                                        aataaGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTaa          >  1:238311/1‑100 (MQ=255)
                                                                                         ataaGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAAc         <  2:816305/100‑1 (MQ=255)
                                                                                         ataaGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAAc         <  1:652747/100‑1 (MQ=255)
                                                                                         ataaGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCAGAAAAAATTTaa          >  1:1348886/1‑99 (MQ=255)
                                                                                          taaGCAAAAAGCCTCGCTGATAAATCAGACAATGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAAc         >  2:1518773/1‑99 (MQ=255)
                                                                                            aGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAg      >  1:882747/1‑100 (MQ=255)
                                                                                             gCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAACATTTAACGAgg     >  1:468771/1‑100 (MQ=255)
                                                                                              cAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAAcaa       >  1:346468/1‑95 (MQ=255)
                                                                                              cAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGc    <  1:2025169/100‑1 (MQ=255)
                                                                                              cAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGc    <  1:2294480/100‑1 (MQ=255)
                                                                                                aaaaGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAg  >  1:1560543/1‑100 (MQ=255)
                                                                                                   |                                                                                                
CGCTCTGAATTTCATTATTTTCCATGGGATCTTCAATCATCAGTTAATAAACCAGCGAAACATCTTAGAGCAAAGTTGCGCTGGCATAAATAAGCAAAAAGCCTCGCTGATAAATCAGACAAGGCTCGACTTGCAGGCAGGTTTGCCGGACAGGCGGTTAACGCCATATCCGGCCTGAAAAAATTTAACGAGGCAG  >  NC_000913/3336779‑3336974

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.