New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3946822NA (NA)18 (0.210) 9/174 NT 16.8% intergenic (+3/‑50) rrfC/aspT 5S ribosomal RNA of rrnC operon/tRNA‑Asp
?NC_000913 = 4040683 91 (1.050)intergenic (+47/+223) rrfA/mobB 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B

Only 100 of 139 total aligned reads displayed.

GATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACG  >  NC_000913/4040588‑4040782
                                                                                               |                                                                                                   
gATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCtgt                                                                                                 <  2:1108048/100‑1 (MQ=38)
  tGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCtgttg                                                                                               >  2:858541/1‑100 (MQ=38)
  tGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCtgttg                                                                                               >  1:1868314/1‑100 (MQ=38)
  tGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCtgttg                                                                                               <  2:1077455/100‑1 (MQ=35)
   ggTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCtgttgt                                                                                              <  2:2137081/100‑1 (MQ=35)
   ggTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCtgttgt                                                                                              <  1:1962229/100‑1 (MQ=38)
    gTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTgttgtt                                                                                             <  2:1314311/100‑1 (MQ=38)
    gTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTgttctt                                                                                             >  1:1639052/1‑100 (MQ=38)
    gTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATAtgttgt                                                                                              >  1:1639489/1‑99 (MQ=25)
    gTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCATTTCGTTTTATCtgttgt                                                                                              >  2:898206/1‑99 (MQ=38)
      aGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGttgtttg                                                                                           >  2:1637068/1‑100 (MQ=38)
      aGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGttgtttg                                                                                           <  1:214954/100‑1 (MQ=38)
       gtgtGGGGTCTCGTAATGCGAAAGTAGGGAACTGCGAGGCATCAAATAAAACGAAAGGCTTAGTCGGAAGACTGGGCCTTTCGTTTTATCTGttgtttg                                                                                           <  2:1390794/99‑1 (MQ=11)
        tgtgGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTc                                                                                         <  1:1404688/100‑1 (MQ=38)
          tgGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCTGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCgg                                                                                       <  2:1310990/100‑1 (MQ=255)
           ggggTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCgg                                                                                       >  1:296220/1‑99 (MQ=38)
           ggggTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGt                                                                                      >  1:1350149/1‑100 (MQ=38)
           ggggTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGt                                                                                      <  1:468506/100‑1 (MQ=38)
            gggTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTg                                                                                     <  1:1775477/100‑1 (MQ=38)
             ggTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTg                                                                                     <  1:2128021/99‑1 (MQ=38)
             ggTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGa                                                                                    <  1:2109894/100‑1 (MQ=38)
              gtttcctcATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGa                                                                                    <  2:1470987/96‑1 (MQ=25)
               tctcCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGa                                                                                    <  2:1672389/98‑1 (MQ=38)
                 tcctcATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGc                                                                                <  1:2324392/100‑1 (MQ=38)
                 tcctcATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGc                                                                                <  1:1329515/100‑1 (MQ=38)
                   ctcATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGctc                                                                              <  1:1923289/100‑1 (MQ=35)
                    tcATGCGAGAGTAGGGAACTGCGAGGCATCAATTAAAACGATAGGCTCAGTCGGAAGACTGGGCGTTTCGTTTTATGTGTTGTTTGTCGGTGAgcgcg                                                                               >  2:1715232/1‑97 (MQ=11)
                     cATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCtctc                                                                            >  2:1785290/1‑100 (MQ=33)
                      aTGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTcc                                                                           <  1:710298/100‑1 (MQ=33)
                       tGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCt                                                                          >  1:2299578/1‑100 (MQ=33)
                        gCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTg                                                                         <  2:2052294/100‑1 (MQ=32)
                        gCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTg                                                                         <  1:1150859/100‑1 (MQ=33)
                        gCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTg                                                                         <  1:1251869/100‑1 (MQ=33)
                          gagaGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAg                                                                       <  2:2208406/100‑1 (MQ=33)
                            gagTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTa                                                                     >  2:1063244/1‑100 (MQ=32)
                             agTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAg                                                                    <  2:1666647/100‑1 (MQ=33)
                              gTAGGGAACTGCCAGGCATCAAATAAAACTAAAGGTTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAgg                                                                   <  2:586172/100‑1 (MQ=12)
                              gTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAgg                                                                   >  1:61222/1‑100 (MQ=33)
                              gTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAgg                                                                   <  1:1497328/100‑1 (MQ=32)
                                 gggAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACa                                                                >  1:791935/1‑100 (MQ=33)
                                 gggAACTACCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGATTTATCTGTTGTTTGACGGTGAACGCTCTCCTGAGTAGGACa                                                                >  2:398994/1‑100 (MQ=255)
                                     aCTGCCAGGCATCAAATAAAACGAAAGGCGCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATc                                                            <  2:119535/100‑1 (MQ=18)
                                      cTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATcc                                                           >  1:1106886/1‑100 (MQ=33)
                                           aGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCgg                                                      <  1:1854940/100‑1 (MQ=33)
                                             gCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGa                                                    <  1:811398/100‑1 (MQ=32)
                                              cATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATttgatgcctggcagttccctactctcgcatggggagaccccacactacca                                                   <  1:2182502‑M2/100‑51 (MQ=255)
                                               aTCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGc                                                  >  1:584249/1‑100 (MQ=33)
                                                 cAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCgg                                                <  1:1254502/100‑1 (MQ=32)
                                                 cAAATAAAACGAAAGGCTCAGTCGAAAGACTGAGCCTTTCGTTTTATttgatgcctggcagttccctactctcgcatggggcgcccccacactaccatcg                                                <  1:1549588‑M2/100‑54 (MQ=255)
                                                    aTAAAACGAAAGGCTCAGTGGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGGGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGAtt                                             <  1:2108612/100‑1 (MQ=16)
                                                    aTAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGAtt                                             <  2:1913609/100‑1 (MQ=32)
                                                    aTAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGAtt                                             <  2:2023566/100‑1 (MQ=33)
                                                     tAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGAttt                                            >  1:709750/1‑100 (MQ=33)
                                                     tAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGAttt                                            >  1:1233086/1‑100 (MQ=33)
                                                     tAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGAttt                                            <  1:247575/100‑1 (MQ=32)
                                                      aaaaCGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGATAAATCCGCCGGGAGCGGATTTg                                           <  2:570532/100‑1 (MQ=17)
                                                      aaaaCGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTg                                           <  1:2004781/100‑1 (MQ=32)
                                                       aatcGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGa                                          <  2:1623792/97‑1 (MQ=17)
                                                        aaCGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGaa                                         <  1:1485996/100‑1 (MQ=33)
                                                          cGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAAc                                        <  2:479501/99‑1 (MQ=32)
                                                          cGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACg                                       <  2:2118362/100‑1 (MQ=33)
                                                           gAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGt                                      >  2:178776/1‑100 (MQ=32)
                                                              aGGCTCAGTCGGAAGACTTGGCCTTGCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTg                                           <  2:2092306/92‑1 (MQ=12)
                                                              aGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGc                                   <  2:1384317/100‑1 (MQ=32)
                                                               ggttcatgcGGAAGACTGGGCCTTTCGTTTTATCTTTTGTTTCTCCGTGAACGCTCTCCTTAGTAGGACAAATCCGCCTGGAGCTGATTTGAACGTTGCg                                  <  2:696811/92‑1 (MQ=11)
                                                               ggCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTggg                                  <  1:1618946/100‑3 (MQ=18)
                                                               ggCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGc                                   >  2:651222/1‑99 (MQ=32)
                                                                gCTCAGTCGGAAGACTGAGCCTTTTGTTTTATttgatgtctggcagttccctactctcgcatggggagaccccacactaccatcggcgctacggcgtttc                                 <  2:2328172‑M2/100‑69 (MQ=255)
                                                                gCTCAGTCGAAAGACTGGGCCTTTCGTTTTATttgatgcctggcagttccctactctcgcatggggagaccccacactaccatcggcgctacggcgtttc                                 <  2:2226051‑M2/100‑69 (MQ=255)
                                                                 cTCAGTCGAAAGACTGGGCCTTTCGTTTTATttgatgcctggcagttccctactctcgcatggggagaccccacactaccatcggcgctacggcgtttca                                <  1:1202698‑M2/100‑70 (MQ=255)
                                                                   cAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAg                               <  2:1210750/99‑1 (MQ=33)
                                                                    aGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCa                             <  1:358741/100‑1 (MQ=33)
                                                                     gTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCaa                            >  1:2054853/1‑100 (MQ=32)
                                                                      tCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAAc                           >  2:148116/1‑100 (MQ=32)
                                                                        ggAAGACTGGGCCTTTTGTTTTATttgatgtctggcagttccctactctcgcatggggagaccccacactaccatcggcgctacggcgtttcacttctga                         >  1:23966‑M2/1‑24 (MQ=255)
                                                                                 atcctcTTGTTATATttgatgcctggcagttccctactctcgcatggggagaccccacactaccatcggcgctacggcgtttcacttctgagttcggc                  >  2:29895‑M2/3‑15 (MQ=255)
                                                                                    cTTTCGTTTTATttgatgcctggcagttccctactctcgcatggggagaccccacactaccatcggcgctacggcgtttcacttctgagttcggcatggg             <  1:215664‑M2/100‑89 (MQ=255)
                                                                                    cTTTCGTTTTATttgatgcctggcagttccctactctcgcatggggagaccccacactaccatcggcgctacggcgtttcacttctgagttcggcatggg             >  1:1794982‑M2/1‑12 (MQ=255)
                                                                                    cTTTCGTTTTATttgatgcctggcagttccctactctcgcatggggagaccccacaccacaatcggcgctacggcgtttcacttctgggttctgcatgg              <  2:1681402‑M2/99‑88 (MQ=255)
                                                                                      ttCGTTTTATttgatgcctggcagttccctactctcgcatggggagaccccacactaccatcggcgctacggcgtttcacttctgagttcggcatgggg            <  1:253074‑M2/99‑90 (MQ=255)
                                                                                        cGTTTTATttgatgcctggcagttccctactctcgcatggggagaccccacactaccatcggcgctacggcgtttcacttctgagttcggcatggggtca         >  2:1549570‑M2/1‑8 (MQ=255)
                                                                                         gTTTTATttgatgcctggcagttccctactgtcgcatggggagaccccacactaccatcggcgctacggcgtttcacttctgagttcggaatggggtcag        <  2:1572639‑M2/100‑94 (MQ=255)
                                                                                         gTTTTATttgatgcctggcagttccctactctcgcatggggagaccccacactaccatcggcgctacggcgtttcacttctgagttcggcatggggtcag        <  1:1932371‑M2/100‑94 (MQ=255)
                                                                                         gTTTTATttgatgcctggcagttccatactatcgcatggggagaccccacactaccatcggcgctacggcgtttcacttctgagttcggaatggggtcag        <  2:1572574‑M2/100‑94 (MQ=255)
                                                                                            ttATttgatgcctggcagttccctactctcgcatggggagaccccacactaccatcggcgctacggcgtttcacttctgagttcggcatggggtcaggtg     <  1:836562‑M2/100‑97 (MQ=255)
                                                                                            ttATttgatgcctggcagttccctactctcgcatggggagaccccacactaccatcggcgctacggcgtttcacttctgagttcggcatggggtcaggtg     >  1:957876‑M2/1‑4 (MQ=255)
                                                                                            ttATttgatgcctggcagttccctactctcgcatggggagaccccacactaccatcggcgctacggcgtttcacttctgagttcggcatggggtcaggtg     <  1:159413‑M2/100‑97 (MQ=255)
                                                                                             tATttgatgcctggcagttccctactctcgcatggggagaccccacactaccatcggcgctacggcgtttcacttctgagttcggcatggggtcaggtgg    <  2:996100‑M2/100‑98 (MQ=255)
                                                                                              aTttgatgcctggcagttccctactctcgcatggggagaccccacactaccatcggcgctccggcgtttcacttctgagttcggcatggggtcaggtggg   <  2:1488357‑M2/100‑99 (MQ=255)
                                                                                              aTttgatgcctggcagttccctactctcgcatggggagaccccacactaccatcggcgctacggcgtttcacttctgagttcggcatggggtcaggtggg   >  2:568675‑M2/1‑2 (MQ=255)
                                                                                              aTttgatgcctggcagttccctactctcgcatggggagaccccacactaccatcggcgctacggcgtttcacttctgagttcggcatggggtcaggtggg   <  1:798581‑M2/100‑99 (MQ=255)
                                                                                              aTttgatgcctggcagttccctactctcgcatggggagaccccacactaccatcggcgctacggcgtttcacttctgagttcggcatggggtcaggtggg   <  1:204219‑M2/100‑99 (MQ=255)
                                                                                              aTttgatgcctggcagttccctactctcgcatggggagaccccacactaccatcggcgctacggcgtttcacttctgagttcaacatggggaca         <  2:1348007‑M2/94‑93 (MQ=255)
                                                                                              aTttgatgcctggcagttccctactctcgcatggggagaccccacacgaccatcggcgctacggcgtttcacttctgagttcggcatggggtcagatggg   <  1:1428853‑M2/100‑99 (MQ=255)
                                                                                               tttgatgcctggcagttccctactctcgcatggggagaccccacactgccatcggcgctacggcgtttcacttctgagttcggcatggggtcaggtggga  >  1:1993053‑M2/1‑1 (MQ=255)
                                                                                               tttgatgcctggcagttccctactctcgcatggggagaccccacactaccatcggcgctacggcgtttcacttctgagttcggcatggggtcaggtggga  <  2:1756100‑M2/100‑100 (MQ=255)
                                                                                               tttgatgcctggcagttccctactctcgcatggggagaccccacactaccatcggcgctacggcgtttcacttctgagttcggcatggggtcaggtggga  <  1:2373700‑M2/100‑100 (MQ=255)
                                                                                               tttgatgcctggcagttccctactctcgcatggggagaccccacactaccatcggcgctacggcgtttcacttctgagttcggcatggggtcaggtggga  >  1:2173428‑M2/1‑1 (MQ=255)
                                                                                               tttgatgcctggcagttccctactctcgcatggggagaccccacactaccatcggcgctacggcgtttcacttctgagttcggcatggggtcaggtggga  <  2:773881‑M2/100‑100 (MQ=255)
                                                                                               tttgatgcctggcagttccctactctcgcatggggagaccccacactaccatcggcgctacggcgtttcacttctgagttcggcatggggtcaggtggga  <  1:1353392‑M2/100‑100 (MQ=255)
                                                                                               |                                                                                                   
GATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACG  >  NC_000913/4040588‑4040782

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.