BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4636885	80 (0.920)	6 (0.070)	4/168	NT	7.0%	coding (190/1425 nt)	creC	sensory histidine kinase in two‑component regulatory system with CreB or PhoB
*	?	NC_000913	= 4636902	83 (1.020)	6 (0.070)	4/168	NT	7.0%	coding (207/1425 nt)	creC	sensory histidine kinase in two‑component regulatory system with CreB or PhoB
Rejected: Frequency below cutoff threshold.

Only 100 of 105 total aligned reads displayed.

CAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATGCGCAGG  >  NC_000913/4636805‑4636999

cAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGgc                                                                                                 <  2:551332‑M2/100‑3 (MQ=255)

 aaCGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGgcg                                                                                                >  2:2133000‑M2/1‑97 (MQ=255)

  aCGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGgcgt                                                                                               >  1:1971463‑M2/1‑96 (MQ=255)

   cGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGgcgtt                                                                                              >  1:381660‑M2/1‑95 (MQ=255)

   cGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGgcgtt                                                                                              >  2:2011541‑M2/1‑95 (MQ=255)

      atgggACGTTGATCCACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGTCAACTGGCGCAGGCGttt                                                                                             <  2:938645/96‑1 (MQ=255)

      aGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTaa                                                                                           <  1:1385620/100‑1 (MQ=255)

      aGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTaa                                                                                           <  1:1390381/100‑1 (MQ=255)

       ggggACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAAt                                                                                          <  1:1312970/100‑1 (MQ=255)

        gggACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATc                                                                                         <  1:971916/100‑1 (MQ=255)

         ggACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGATCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCa                                                                                        <  2:2265850/100‑1 (MQ=255)

          gACGTTGATCGTCACCGCAACGTTGCTGGCGGGTCTGGCGCGTCCCGAGTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCGGGCGTTTAATCAg                                                                                       <  2:1628284/100‑1 (MQ=255)

          gACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAg                                                                                       >  1:727103/1‑100 (MQ=255)

           aCGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGc                                                                                      <  2:811652/100‑1 (MQ=255)

            cGTTGATCGACATCGCAACGTTGGTGGTGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGGCCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCt                                                                                     <  1:497006/100‑1 (MQ=255)

              ttGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTac                                                                                   <  1:426198/100‑1 (MQ=255)

              ttGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTac                                                                                   <  2:259101/100‑1 (MQ=255)

               tGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTaca                                                                                  <  1:1825066/100‑1 (MQ=255)

                gATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTTTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAACAAGCTacaa                                                                                 >  2:984092/1‑100 (MQ=255)

                gATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTacaa                                                                                 >  2:2252706/1‑100 (MQ=255)

                gATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTacaa                                                                                 <  1:1832451/100‑1 (MQ=255)

                 aTCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTacaac                                                                                >  2:424750/1‑100 (MQ=255)

                   cGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACAt                                                                              >  2:1119946/1‑100 (MQ=255)

                   cGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACAt                                                                              <  2:494806/100‑1 (MQ=255)

                    gACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATc                                                                             >  1:245355/1‑100 (MQ=255)

                    gACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATc                                                                             >  1:1365654/1‑100 (MQ=255)

                       acCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGcc                                                                          >  2:2356046/1‑100 (MQ=255)

                        ccGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGccc                                                                         >  1:451072/1‑100 (MQ=255)

                        ccGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGAAACTGGTGCAGGCGTTTAATCAGCTACAACATCggc                                                                          >  2:471039/1‑97 (MQ=255)

                           cAACGTTGCTGGCGGTTCTGGCGCGTCTCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCGGTCGTGTAATCAGCTACAACATCGCCCGtt                                                                      >  2:704100/1‑100 (MQ=255)

                                ttGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTcgcg                                                                 <  2:101559/100‑1 (MQ=255)

                                 tGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTcg                                                                   <  2:569587/97‑1 (MQ=255)

                                 tGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCgcgc                                                                >  1:1574424/1‑100 (MQ=255)

                                 tGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCGGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCgcgc                                                                <  2:262659/100‑1 (MQ=255)

                                  gCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGcc                                                               <  1:1168844/100‑1 (MQ=255)

                                  gCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGcc                                                               >  2:2067854/1‑100 (MQ=255)

                                   gttgCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCa                                                              >  1:1080978/4‑100 (MQ=255)

                                   cTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCa                                                              >  1:425426/1‑100 (MQ=255)

                                     ggCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAat                                                            <  1:329095/100‑1 (MQ=255)

                                         gAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCg                                                        >  1:1729789/1‑100 (MQ=255)

                                          aGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCgg                                                       >  2:2149953/1‑100 (MQ=255)

                                           gCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCg                                                        >  1:1212656/1‑98 (MQ=255)

                                           gCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGt                                                      >  1:1829871/1‑100 (MQ=255)

                                           gCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTCCGCGCCAATATCGGt                                                      >  1:2370457/1‑100 (MQ=255)

                                            cTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTg                                                     <  2:505299/100‑1 (MQ=255)

                                            cTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTg                                                     <  1:956442/100‑1 (MQ=255)

                                             tGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTgg                                                    >  2:1522496/1‑100 (MQ=255)

                                              ggCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGc                                                   >  2:322920/1‑100 (MQ=255)

                                               gcgcGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCa                                                  <  1:827982/100‑1 (MQ=255)

                                                cgcgTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGc                                                   <  1:300456/98‑1 (MQ=255)

                                                 gcgTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCAtt                                                >  1:231498/1‑100 (MQ=255)

                                                    tCCCGTTTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAAc                                             <  1:628882/100‑1 (MQ=255)

                                                    tCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAAc                                             <  2:1964603/100‑1 (MQ=255)

                                                        gttttGTTCTCTGGGGACCCAACGCATGGGCGATTGGTGCTGGTGTTTGGTCGTCTACAAGATTGCCCTTTTCGCGCTGATATCGTTGGCATTagc                                             <  2:1080030/94‑3 (MQ=255)

                                                           ttGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATAGCCCGTTTCGCGCCAATATCGGTGGCATTAACaaa                                          >  2:2074889/1‑96 (MQ=255)

                                                             gCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTgcgc                                    <  1:129264/100‑1 (MQ=255)

                                                             gCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTgcgc                                    <  1:448480/100‑1 (MQ=255)

                                                             gCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTgcgc                                    <  2:1781609/100‑1 (MQ=255)

                                                             gCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCAACAGTTTCGCGCCAATATCGCTGGCATTAAAAAAGTccgc                                    >  2:234680/1‑100 (MQ=255)

                                                              ctctctGGGGACCCAACGCATGGGCAACTGGCGCACGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGTCATTAACAAAGTgcgc                                    <  2:574428/99‑1 (MQ=255)

                                                                ctctGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAAt                                 >  1:2169063/1‑100 (MQ=255)

                                                                 tctGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATg                                <  1:1165752/100‑1 (MQ=255)

                                                                  ctGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATg                                >  1:1831794/1‑99 (MQ=255)

                                                                  ctGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGa                               <  1:2280698/100‑1 (MQ=255)

                                                                  ctGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGa                               >  1:1189363/1‑100 (MQ=255)

                                                                  ctGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGa                               >  1:1216388/1‑100 (MQ=255)

                                                                    ngggACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAat                             >  1:1963420/2‑100 (MQ=255)

                                                                    ggggACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAat                             <  1:551335/100‑1 (MQ=255)

                                                                     gggACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAata                            >  1:353389/1‑100 (MQ=255)

                                                                       gACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATc                          <  2:2141794/100‑1 (MQ=255)

                                                                          ccAACGCATGGGCAACTGGCGCAGGCGTTTAGTCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATg                       <  2:572272/100‑1 (MQ=255)

                                                                          ccAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATg                       >  1:1082481/1‑100 (MQ=255)

                                                                           cAACGCATGGGCAACTGGCGCAGgcgttgggtccccagagagcaaatcgggacgcgccagctccgccagcaacgttgcggtgtcgatcaacgtcccctcc                      <  1:1192256‑M2/100‑78 (MQ=255)

                                                                           cAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGt                      >  2:1234816/1‑100 (MQ=255)

                                                                            aaCGCATGGGCAACTGGCGCAGgcgttgggtccccagagagcacatcgggacgcgccagctccgccagcaacgttgcggtgtcgatcaacgtcccctccg                     <  1:659510‑M2/100‑79 (MQ=255)

                                                                            aaCGCATGGGCAACTGGCGCAGgcgttgggtccccagagagcaaatcgggacgcgccagctccgccagcaacgttgcggtgtcgatcaacgtcccctccg                     <  1:551391‑M2/100‑79 (MQ=255)

                                                                            aaCGCATGGGCAACTGGCGCAGgcgttgagtccccaaagagcaaatcgggacgcgccagctccgccagcaacgttgcgatgtagatcaacgtcc                           <  2:1371538‑M2/94‑73 (MQ=255)

                                                                            aaCGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTc                     <  1:322923/100‑1 (MQ=255)

                                                                            aaCGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTc                     <  1:168280/100‑1 (MQ=255)

                                                                             aCGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCt                    <  1:297549/100‑1 (MQ=255)

                                                                               gCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCTCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCtat                  <  1:592342/100‑1 (MQ=255)

                                                                                cATGGGCAACTGGCGCAGGCGTTTAATCAGCTACGACATCGCGCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCtata                 <  2:2273194/100‑1 (MQ=255)

                                                                                  tGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATg               <  1:337696/100‑1 (MQ=255)

                                                                                  tGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATg               >  2:1553979/1‑100 (MQ=255)

                                                                                   gggCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGa              >  2:334511/1‑100 (MQ=255)

                                                                                    ggCAACTGGCGCAGgcgttgggtccccagagagcaaatcgggacgcgccagctccgccagcaacgttgcggtgtcgatcaacgtcccctccgttgctctt             <  1:1576725‑M2/100‑87 (MQ=255)

                                                                                    ggCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGAc             <  1:958418/100‑1 (MQ=255)

                                                                                    ggCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGAc             <  2:600941/100‑1 (MQ=255)

                                                                                    ggCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGAc             >  1:228911/1‑100 (MQ=255)

                                                                                     gCAACTGGCGCATTCGTTTAATTAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGAc             <  1:975590/99‑1 (MQ=255)

                                                                                     gCAACTGGCGCAGGTGTTTAATCAGCTACAACTTCGCCCGTTTCGCGCCAATATTGGCGGCATTAATAAACCGCGCAAGGAATATCAGGTCTATAGGa              >  2:1640738/1‑98 (MQ=255)

                                                                                      cAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCg           >  2:2345510/1‑100 (MQ=255)

                                                                                      cAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCg           <  2:1199495/100‑1 (MQ=255)

                                                                                        aCTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGAt         >  1:593182/1‑100 (MQ=255)

                                                                                            gcgcAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATgcgc     <  1:2354743/100‑1 (MQ=255)

                                                                                             cgcAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATGCGCa    <  1:1651762/100‑1 (MQ=255)

                                                                                              gcATGCGTTGAATCAGCTACAGCGAGGGCCGGTGGGCGCCAAGATCGGGGGCAGGAACAAAGTTCGCAACGAATATCATGTCTATATGagn            <  2:2223505/91‑3 (MQ=255)

                                                                                               cAGGCGTTTAATCCGCTACACCATCGCCCGCTGCGCGCCAATATCGGTGGCATTAATAAAGTGCGCAATGTATATCATGTCTATATGACCGATg        <  2:2116670/94‑1 (MQ=255)

                                                                                               cAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATGCGCAgg  <  1:1503737/100‑1 (MQ=255)

                                                                                               cAGGCGTTTAATCAGCTACAACATCGCCCGGTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATGCGCAgg  <  1:1088772/100‑1 (MQ=255)

CAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATGCGCAGG  >  NC_000913/4636805‑4636999

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.