| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1423471 = | 39 (0.450) | 10 (0.120) | 6/168 | NT | 18.1% | pseudogene (271/444 nt) | rzpR | pseudogene, Rac prophage; Bacteriophage Rz lysis protein family;Phage or Prophage Related; putative Rac prophage endopeptidase; completely contained in another CDS |
| ? | NC_000913 | 1423543 = | 54 (0.660) | pseudogene (343/444 nt) | rzpR | pseudogene, Rac prophage; Bacteriophage Rz lysis protein family;Phage or Prophage Related; putative Rac prophage endopeptidase; completely contained in another CDS | |||||
GTCGTCGTCGGTTGCACATCAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCTCAGCAATACATAACCGAGCAGTGTTTAAA > NC_000913/1423445‑1423640 | gtcgtcgtcGGTTGCACATCAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGacac > 1:315651/1‑100 (MQ=33) gggtgaaataatcccgttcagcggtGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACAcc > 1:1854941‑M1/26‑100 (MQ=255) gggtgaaataatcccgttcagcggtGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACAcc > 1:1594210‑M1/26‑100 (MQ=255) ggtgaaataatcccgttcagcggtGTCTGTCAGTCAGTGCGTGAAGCCACCACGGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCg > 2:1102115‑M1/25‑100 (MQ=255) ggtgaaataatcccgttcagcggtGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACAcc > 1:1101631‑M1/25‑99 (MQ=255) cgtcgtcgGTTGCACATCAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCg > 1:90614/1‑100 (MQ=33) gtgaaataatcccgttcagcggtGTCTGTCAGTCAGTGCGTGAAGCCACCACGGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGc > 2:1503628‑M1/24‑100 (MQ=255) gtgaaataatcccgttcagcggtGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGc > 1:171518‑M1/24‑100 (MQ=255) gtcgtcgGTTGCACATCAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGc > 1:89984/1‑100 (MQ=33) tcgtcgGTTGCACATCAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCt > 1:1372131/1‑100 (MQ=33) tcgtcaGTTGCAAATCAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGACGACACCGCt > 2:768370/1‑100 (MQ=11) gTTGCACATCAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACgg < 2:939966/100‑1 (MQ=32) ttGCACATCAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACggg < 2:268141/100‑1 (MQ=33) gCACATCAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGat < 2:26742/100‑1 (MQ=33) cacaTCAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCGCCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGatt > 1:1688295/1‑100 (MQ=18) cacaTCAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGatt > 2:716897/1‑100 (MQ=33) cacaTCAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGatt > 1:2096742/1‑100 (MQ=33) acaTCAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGatta > 2:563090/1‑100 (MQ=33) aTCAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGattatt > 1:143083/1‑100 (MQ=33) aTCAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGattatt > 1:1938011/1‑100 (MQ=33) cAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTc > 1:1732281/1‑100 (MQ=33) aaaGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCa < 2:1841060/100‑1 (MQ=33) gcggtgtctgccagtcggggggaggctgcattatccacgccggaggcggtggtggcttcacgcactgactgacagacACCGCTGAACGGGATTATTTCAc > 1:171518‑M2/78‑100 (MQ=255) gcggtgtctgccagtcggggggaggctgcattatccacgccggaggccgtggtggcttcacgcactgactgacagacACCGCTGAACGGGATTATTTCAc > 2:1503628‑M2/78‑100 (MQ=255) cggtgtctgccagtcggggggaggctgcattatccacgccggaggccgtggtggcttcacgcactgactgacagacACCGCTGAACGGGATTATTTCAcc > 2:1102115‑M2/77‑100 (MQ=255) aGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCAcc < 2:845957/100‑1 (MQ=33) aGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCAcc > 2:425547/1‑100 (MQ=33) ggtgtctgccagtcggggggaggctgcattatccacgccggaggcggtggtggcttcacgcactgactgacagacACCGCTGAACGGGATTATTTCAccc > 1:1854941‑M2/76‑100 (MQ=255) ggtgtctgccagtcggggggaggctgcattatccacgccggaggcggtggtggcttcacgcactgactgacagacACCGCTGAACGGGATTATTTCAccc > 1:1594210‑M2/76‑100 (MQ=255) ggtgtctgccagtcggggggaggctgcattatccacgccggaggcggtggtggcttcacgcactgactgacagacACCGCTGAACGGGATTATTTCAcc > 1:1101631‑M2/76‑99 (MQ=255) gCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCAccc > 2:953060/1‑100 (MQ=32) aGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTc > 1:1134908/1‑100 (MQ=33) gtctgccagtcggggggaggctgcattatccacgccggaggcggtggtggcttcacgcactgactgacagacACCGCTGAACGGGATTATTTCACCCTcc > 2:1717204‑M2/73‑100 (MQ=255) GTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTcc < 2:1025330‑M1/100‑1 (MQ=255) GTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTcc < 1:582484‑M1/100‑1 (MQ=255) TCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCg < 2:154080‑M1/100‑1 (MQ=255) ctgccagtcggggggaggctgcattatccacgccggaggcggtggtggcttcacgcactgactgacagacACCGCTGAACGGGATTATTTCACCCTCCgg > 1:360915‑M2/71‑100 (MQ=255) CTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCgg > 2:777020‑M1/1‑100 (MQ=255) tgccagtcggggggaggctgcattatccacgccggaggcggtggtggcttcacgcactgactgacagacACCGCTGAACGGGATTATTTCACCCTCCggg > 2:2139549‑M2/70‑100 (MQ=255) TGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCggg < 2:758663‑M1/100‑1 (MQ=255) cagtcagtGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAAc > 2:1364862/1‑100 (MQ=255) cagtcagtGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAAc < 1:913485/100‑1 (MQ=40) cagtcagtGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAAc > 2:2307895/1‑100 (MQ=255) cagtcagtGCGTGAAGCCACAACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCATCCGGGaa > 2:530041/1‑99 (MQ=255) agtcagtGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACg < 1:2360463/100‑1 (MQ=255) gtcagtGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGa > 2:2257563/1‑100 (MQ=255) cagtGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACt > 1:2021931/1‑100 (MQ=255) ggggggaggctgcattatccacgccggaggcggtggtggcttcacgcactgactgacagacACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTg > 1:149654‑M2/62‑100 (MQ=255) agtGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACt < 1:2037823/99‑1 (MQ=255) gtGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTgg > 2:222117/1‑100 (MQ=255) cGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTaa > 1:2330365/1‑100 (MQ=255) tGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCT‑CCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAatgn < 1:664549/100‑2 (MQ=255) gAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAatga < 2:1089646/100‑1 (MQ=255) aaGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAatgat < 2:60656/100‑1 (MQ=255) aGCCACCACCGCCTCCGGCGTGGATAATTCAGCCTCACCCCGACTGGCAGACACCGCAGAACGGGATTATTTCACCCTCCGGGAACGACTGCTAatgct > 2:2367008/1‑97 (MQ=17) aGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAatgatg > 1:327983/1‑100 (MQ=255) ccaccaCCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCa > 2:763042/1‑100 (MQ=255) ccaccGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGc > 1:1493465/1‑100 (MQ=255) accGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGccc > 1:339175/1‑100 (MQ=255) cTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACtt > 2:1256640/1‑100 (MQ=255) ccGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGa < 2:398024/100‑1 (MQ=255) cGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGaa < 1:1699651/100‑1 (MQ=255) ggCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAg < 2:1449544/100‑1 (MQ=255) gTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACTACTGGTAATGATGCAGGACCAACTTGAAgg < 2:308743/98‑1 (MQ=255) ggATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCt > 1:308919/1‑100 (MQ=255) ggATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCt > 1:1737350/1‑100 (MQ=255) ggATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGACCAACTTGAAGGTGCt > 2:1402345/1‑100 (MQ=255) tAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCTCAg < 1:1071174/100‑1 (MQ=255) aaTGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCTCAGc < 2:1274230/100‑1 (MQ=255) aaTGCAGCCTCCCCCCGACTGGCAGAAACCGCTGAACGGGATTATTTCACCCTACGGGAACGACTGGTAATGATGCATGATCAACTTGAAGGTGCTCAGc < 2:741991/100‑1 (MQ=21) aTGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCTCAGCa > 1:1000411/1‑100 (MQ=255) tGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCCACTTGAAGGTGCTCAGCaa > 1:794484/1‑100 (MQ=255) aGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCTCAGCAATAc < 1:1543003/100‑1 (MQ=255) ccccccGACTGGCAGACACCGCTGAACAGCATTATTTCACCCTCCGGGAACGACAGGTAATGCTGCAGGCCCAACTTGAAGGTGCTCAGCAATACATaa > 2:455820/1‑99 (MQ=37) cccccGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCTCAGCAATACATAAc < 2:268969/99‑1 (MQ=255) ccccGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCTCAGCAATACATAACCg > 1:1535463/1‑100 (MQ=255) ccccGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCTCAGCAATACATAACCg > 1:212026/1‑100 (MQ=255) gACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCTCAGCAATACATAACCGAGCa < 1:563093/100‑1 (MQ=255) aCTGGCAGACACCGTTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCTCAGCAATACATAACCGAGCAg < 1:831549/100‑1 (MQ=255) cTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCTCAGCAATACATAACCGAGCAgt > 1:700096/1‑100 (MQ=255) ggCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCTCAGCAATACATAACCGAGCAgtgt > 2:989098/1‑100 (MQ=255) ggCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCTCAGCAATACATAACCGAGCAgtgt > 1:373681/1‑100 (MQ=255) ggCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCTCAGCAATACATAACCGAGCAgtgt > 2:682549/1‑100 (MQ=255) cagacACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCTCAGCAATACATAACCGAGCAGTGttt > 1:1954566‑M2/6‑100 (MQ=255) cagacACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCTCAGCAATACATAACCGAGCAGTGttt > 1:643039‑M2/6‑100 (MQ=255) acACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCTCAGCAATACATAACCGAGCAGTGTTTaaa < 2:2097166‑M2/98‑1 (MQ=255) | GTCGTCGTCGGTTGCACATCAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCTCAGCAATACATAACCGAGCAGTGTTTAAA > NC_000913/1423445‑1423640 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |