BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3255217 =	NA (NA)	8 (0.100)	6/164	NT	NA	noncoding (1/103 nt)	REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences
*	?	NC_000913	= 4254000	NA (NA)	8 (0.100)	6/164	NT	NA	noncoding (100/130 nt)	RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site	RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site

Only 100 of 124 total aligned reads displayed.

GCCGGATGATCATCCGGCTTTCTTCTGGGTTGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAA  >  NC_000913/4253901‑4254099

gCCGGATGATCATCCGGCTTTCTTCTGGGTTGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAg                                                                                                     >  1:707691/1‑100 (MQ=255)

 ccGGATGATCATCCGGCTTTCTTCTGGGTTGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGg                                                                                                    >  2:799495‑M2/1‑99 (MQ=255)

  cGGATGATCATCCGGCTTTCTTCTGGGTTGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGgc                                                                                                   >  2:1955946‑M2/1‑98 (MQ=255)

  cGGATGATCATCCGGCTTTCTTCTGGGTTGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGgc                                                                                                   <  1:749159‑M2/100‑3 (MQ=255)

  cGGATGATCATCCGGCTTTCTTCTGGGTTGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGgc                                                                                                   <  2:2093706‑M2/100‑3 (MQ=255)

   ggATGATCATCCGGCTTTCTTCTGGGTTGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGgcc                                                                                                  <  1:503481‑M2/100‑4 (MQ=255)

     atgatCATCCGTCTTTCTTCTAGGTTGCCTTATGCGATGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGgccgg                                                                                                >  2:1151394‑M2/1‑95 (MQ=255)

      tgatCATCCGGCTTTCTTCTGGGTTGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGgccgga                                                                                               <  2:624149‑M2/100‑7 (MQ=255)

      tgatCATCCGGCTTTCTTCTAAAGTGCCTGATGCGATACGCTTCTCAGGCCTACACAACACATCGCACTTTATTGAATTTGCAGATTATGGAAGACCGGa                                                                                               >  2:1635572/1‑100 (MQ=37)

            tcCGGCTTTCTTCTGGGTTGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGc                                                                                         <  1:298637/100‑1 (MQ=255)

             ccGGCTTTCTTCTGGGTTGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCg                                                                                        <  1:1559347/100‑1 (MQ=255)

               ggCTTTCTTCTGGGTTGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGtt                                                                                      >  1:1424705/1‑100 (MQ=255)

                  tttCTTCTGGGTTGCCTGATGCGCGGCGCTTCTCAGGACTACACAACACATCGCAATGTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGtttt                                                                                    <  1:211731/99‑1 (MQ=255)

                   ttcttcTGGGTTGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTcg                                                                                  <  2:1664698/100‑1 (MQ=255)

                    tcttctGGGTTGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTcgc                                                                                 <  1:1550248/100‑1 (MQ=255)

                    tcttctGGGTTGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTcgc                                                                                 <  2:1996755/100‑1 (MQ=255)

                     cttctGGGTTGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTcgcc                                                                                >  1:736881/1‑100 (MQ=255)

                     cttctGGGTTGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTcgcc                                                                                <  1:81049/100‑1 (MQ=255)

                     cttctGGGTTGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTcgcc                                                                                <  1:18582/100‑1 (MQ=255)

                           ggTTGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGgccggatgcggcgaaaacgccttatcc                                                                          >  2:51373‑M2/1‑73 (MQ=255)

                            gTTGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGgccggatgcggcgaaaacgccttatccg                                                                         >  1:875162‑M2/1‑72 (MQ=255)

                            gTTGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGgccggatgcggcgaaaacgccttatcc                                                                          >  1:322508‑M2/1‑72 (MQ=255)

                            gTTGCCTGATGCGCGGCGCATCTCAGGCCTACAAAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCg                                                                         >  2:442712/1‑100 (MQ=255)

                             ttGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTAAATTTGCAGATTATGGAAGgccggatgcggcgaaaacgccttatccgg                                                                        >  2:2383064‑M2/1‑71 (MQ=255)

                              tGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAATGCGTTTTCGCCGCATCCGGc                                                                       <  2:374199/100‑1 (MQ=255)

                              tGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGc                                                                       <  2:379594/100‑1 (MQ=255)

                              tGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCACATCCGGc                                                                       >  2:920568/1‑100 (MQ=255)

                                 cTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAAt                                                                    >  1:1962218/1‑100 (MQ=255)

                                   gATGCGCGGCGCTTCTTATGCCTACACAACACATCGCAATTTATTGGATTTGCAGATTATGGAAGGTCGGATAAGGCGTTTTCGCCGCAGCCGGCAAtt                                                                   <  2:570042/99‑1 (MQ=37)

                                        gcggcgCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTctctct                                                             <  1:141486/100‑1 (MQ=255)

                                        gcggcgCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTctctct                                                             >  1:1511842/1‑100 (MQ=255)

                                        gcggcgCTTCTCACGCCTACACAACACAGCGCAATTTATTGAATTTGCAGATTATGTAACGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTctctct                                                             <  2:1042025/100‑1 (MQ=37)

                                         cggcgCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTg                                                            <  2:1892083/100‑1 (MQ=255)

                                             gcTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATAGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTa                                                        >  2:1850293/1‑100 (MQ=255)

                                                tctcAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCTGCAATTCTCTCTGATTAccc                                                     >  1:946942/1‑100 (MQ=255)

                                                tctcAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTAc                                                       >  1:2046893/1‑98 (MQ=255)

                                                   cAGGCCTACACAACACATCGCAATTTATTGATTTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTc                                                  <  1:2351455/100‑1 (MQ=255)

                                                     ggCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGc                                                >  1:2021079/1‑100 (MQ=255)

                                                     ggCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGc                                                >  1:1739249/1‑100 (MQ=255)

                                                      gCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGcc                                               <  2:1217514/100‑1 (MQ=255)

                                                       ccTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGccc                                              >  1:1704959/1‑100 (MQ=255)

                                                        cTACATAACACATCGCAATTCATTTAAGTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGcc                                               <  2:68722/98‑1 (MQ=37)

                                                        cTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCt                                             >  1:1815960/1‑100 (MQ=255)

                                                        cTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCt                                             <  1:1365336/100‑1 (MQ=255)

                                                         tACACAACACATGGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTg                                            >  1:1574052/1‑100 (MQ=255)

                                                         ccgatctcacaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTg                                            <  1:1925619/93‑1 (MQ=255)

                                                          acacaacacaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGc                                           >  2:1170583/1‑100 (MQ=255)

                                                          acacaacacaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGc                                           <  1:899987/100‑1 (MQ=255)

                                                             caacaccTCGCAATTTATTAAATTTGAAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCACTAAATTCTCACTGATTACCCTTCGCCCTGCg                                          >  2:1415356/1‑98 (MQ=25)

                                                             caacacaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTc                                        >  1:2076024/1‑100 (MQ=255)

                                                             caacacaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTc                                        >  1:893503/1‑100 (MQ=255)

                                                             caacacaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTc                                        >  1:159411/1‑100 (MQ=255)

                                                             caacacaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCCCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTc                                        >  1:1267228/1‑100 (MQ=255)

                                                              aacacaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTc                                        <  2:946931/99‑1 (MQ=255)

                                                               acacaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGc                                      <  1:1482366/100‑1 (MQ=255)

                                                               acacaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGc                                      <  2:1739228/100‑1 (MQ=255)

                                                               acacaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGc                                      <  1:1041841/100‑1 (MQ=255)

                                                               acacaTCGCAATTTATTAAATTTACAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCAGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCg                                       >  2:548735/1‑99 (MQ=255)

                                                                cacaTCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTgagatcgg                                     >  2:1925597/1‑93 (MQ=255)

                                                                   aTCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCActc                                  >  2:1457340/1‑100 (MQ=255)

                                                                    tCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATACGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCAatct                                 >  2:1339149/1‑100 (MQ=255)

                                                                     cGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACtctc                                <  2:1000113/100‑1 (MQ=255)

                                                                     cGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACtctc                                <  1:624152/100‑1 (MQ=255)

                                                                     cGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACtctc                                <  1:1117461/100‑1 (MQ=255)

                                                                      gCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCa                               >  2:372070/1‑100 (MQ=255)

                                                                        aaTTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACtctc                                <  1:1393188/97‑1 (MQ=255)

                                                                         aTTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCACATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATc                            <  1:920579/100‑1 (MQ=255)

                                                                          tttATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCg                           <  1:1085385/100‑1 (MQ=255)

                                                                            tATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTc                         <  2:651669/100‑1 (MQ=255)

                                                                             aTTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCa                        >  2:1078448/1‑100 (MQ=255)

                                                                             aTTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCa                        >  2:1696911/1‑100 (MQ=255)

                                                                              ttGAATTTGCAGATTATGGACGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGAACTCTCAATCGTCa                        <  1:351572/99‑1 (MQ=255)

                                                                               tGAATTTGTAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCCGAATCGTCaaa                      >  2:1580022/1‑100 (MQ=255)

                                                                               tGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCaaa                      >  1:1027503/1‑100 (MQ=255)

                                                                               tGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCaaa                      >  1:1325548/1‑100 (MQ=255)

                                                                               tGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCaaa                      >  1:1797657/1‑100 (MQ=255)

                                                                                   tttGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAAc                     <  1:2307486/97‑1 (MQ=255)

                                                                                   tttGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCa                  >  1:398682/1‑100 (MQ=255)

                                                                                    ttGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCAc                 >  1:156759/1‑100 (MQ=255)

                                                                                    ttGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCAc                 <  2:2001326/100‑1 (MQ=255)

                                                                                     tGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACg                >  1:1665476/1‑100 (MQ=255)

                                                                                     tGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACg                <  1:1998591/100‑1 (MQ=255)

                                                                                       cAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTc              >  1:1439616/1‑100 (MQ=255)

                                                                                         gATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTg            <  2:274761/100‑1 (MQ=255)

                                                                                          aTTATGGAAGGCCGTATAAGGCGTGTTTTCTGCATCTGGGAATTGTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCTTCAAACGCACGTCTGa           <  2:2033864/100‑1 (MQ=255)

                                                                                          aTTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGa           >  2:314232/1‑100 (MQ=255)

                                                                                           ttATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGa           <  1:5347/99‑1 (MQ=255)

                                                                                            tATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCTCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATg         <  2:1470564/100‑1 (MQ=255)

                                                                                            tATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATg         <  1:175518/100‑1 (MQ=255)

                                                                                              tGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACTTCTGATGTa       >  1:805490/1‑100 (MQ=255)

                                                                                              tGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTa       >  1:2302/1‑100 (MQ=255)

                                                                                              tGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTa       <  2:1027492/100‑1 (MQ=255)

                                                                                               ggcgggCCGCGTAAGGCGTGTTCGCCGCGAGCGGCAATTCGCGCTGATTACCCGTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATg         <  2:2285330/93‑1 (MQ=255)

                                                                                                gAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTaa      >  2:923814/1‑99 (MQ=255)

                                                                                                gAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAAt     <  2:1159077/100‑1 (MQ=255)

                                                                                                gAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAAt     >  2:551366/1‑100 (MQ=255)

                                                                                                 aaGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATc    <  1:1038542/100‑1 (MQ=255)

                                                                                                 aaGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATc    <  1:234892/100‑1 (MQ=255)

                                                                                                  aGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCa   <  2:979727/100‑1 (MQ=255)

                                                                                                   ggCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCaa  >  1:2146490/1‑100 (MQ=255)

GCCGGATGATCATCCGGCTTTCTTCTGGGTTGCCTGATGCGCGGCGCTTCTCAGGCCTACACAACACATCGCAATTTATTGAATTTGCAGATTATGGAAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTCTCTCTGATTACCCTTCGCCCTGCGTCGCACTCTCAATCGTCAAACGCACGTCTGATGTAATCAA  >  NC_000913/4253901‑4254099

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.