BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_000913	36,231	T→C	100%	intergenic (‑69/+40)	caiD ← / ← caiC	carnitinyl‑CoA dehydratase/putative crotonobetaine/carnitine‑CoA ligase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	36,231	0	T	C	100.0%	364.2 / ‑6.7	109	intergenic (‑69/+40)	caiD/caiC	carnitinyl‑CoA dehydratase/putative crotonobetaine/carnitine‑CoA ligase
Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (56/52); total (56/53)

Only 100 of 109 total aligned reads displayed.

GGTCAGATGTAATGATTCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGTGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAGCAATTACGTGGCAGATCTTTTCT  >  NC_000913/36139‑36327

ggTCAGATGTAATGATTCACTCATTCCTTTTCTCCATTTTTGCTTTTTTATTGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGat                                                                                             >  1:1884867/1‑98 (MQ=255)

ggTCAGATGTAATGATTCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGatta                                                                                           >  1:1962888/1‑100 (MQ=255)

 gTCAGATGTAATGATTCATTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGatta                                                                                           <  2:331443/99‑1 (MQ=255)

  tCAGATGTAATGATTCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGattatt                                                                                         <  2:971985/100‑1 (MQ=255)

   cAGATGTAATGATTCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGAttatta                                                                                        <  2:1172551/100‑1 (MQ=255)

   cAGATGTAATGATTCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGAttatta                                                                                        >  1:521536/1‑100 (MQ=255)

    aGATGTAATGATTCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGAttatta                                                                                        <  1:1973135/99‑1 (MQ=255)

     gATGTAATGATTCGCTCATTCCTTTTCTCCATTTTTTTGTTTTTATTGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGc                                                                                      >  2:1477600/1‑100 (MQ=255)

     gATGTAATGATTCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGc                                                                                      >  1:1156522/1‑100 (MQ=255)

     gATGTAATGATTCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGc                                                                                      >  1:1300353/1‑100 (MQ=255)

        gTAATGATTCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTgg                                                                                   <  1:2249219/100‑1 (MQ=255)

         tAATGATTCACTCATTCCTTTTCTCCATTTTTTTTTTTTTTTTTATGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTgtc                                                                                  >  2:210829/1‑98 (MQ=255)

         tAATGATTCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGc                                                                                  >  1:2240593/1‑100 (MQ=255)

          caTGATTCCCTCATTTATTATATACATTTATACATTTTTAGGGACGACATTATCACTGTAAAATATTCATATTGTATTAATGCGTGATTATTAGCTGGCa                                                                                 >  2:407333/2‑100 (MQ=255)

          aaTGATTCACTCATTCCTTTTCTCCGTTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCa                                                                                 >  1:2380665/1‑100 (MQ=255)

          aaTGATTCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTCTTAGCTGGCa                                                                                 >  1:458817/1‑100 (MQ=255)

           aTGATTCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAg                                                                                <  2:733984/100‑1 (MQ=255)

            tGATTCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAgg                                                                               <  1:1477616/100‑1 (MQ=255)

              aTTCACTCATTCCTTTTCTCCATTTTTGCTTTTTCATGGACGACAACATCACTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGt                                                                             <  2:603687/100‑1 (MQ=255)

              aTTCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGt                                                                             <  1:2399156/100‑1 (MQ=255)

              aTTCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGt                                                                             <  2:742051/100‑1 (MQ=255)

               ttCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTa                                                                            >  2:2120939/1‑100 (MQ=255)

               ttCACTCATTCCTTTTCTACATTTTTGCTTTTTCAGGAACGACAACATCCCTGCAAAAAATGCATATTCTTTTAGAGCGTGATTATTAGCTGGCAGGGt                                                                             <  2:1844624/99‑1 (MQ=255)

                tttcttaTTTCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAg                                                                           <  1:204980/94‑1 (MQ=255)

                tCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAg                                                                           <  1:2206869/100‑1 (MQ=255)

                tCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAg                                                                           <  1:2108891/100‑1 (MQ=255)

                 cACTCATTCCTTTTCTCAATTTTTGATTTTTAAGGGACGACAACATTCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGTCAGGGTa                                                                            >  2:122642/1‑98 (MQ=255)

                  aCTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGtt                                                                         >  1:566353/1‑100 (MQ=255)

                   cTCATTCCTTTTCTCCATTTTTTCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTc                                                                        >  2:816238/1‑100 (MQ=255)

                     cATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTccc                                                                      <  2:302760/100‑1 (MQ=255)

                     cATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTccc                                                                      <  1:1443298/100‑1 (MQ=255)

                      agtCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCGCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCct                                                                     >  1:1620525/3‑100 (MQ=255)

                       ttCCTTTTTTTTATTTTTTTTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCctg                                                                    <  1:34982/100‑1 (MQ=255)

                        tCCTTTTCTCAATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATCTTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCctg                                                                    >  1:1188688/1‑99 (MQ=255)

                         ccTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGCTTATTAGCTGGCAGGGTAGTTCCctgct                                                                  >  2:2297001/1‑100 (MQ=255)

                          cTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCctgctg                                                                 >  1:1389557/1‑100 (MQ=255)

                           ttttCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGt                                                                <  2:747294/100‑1 (MQ=255)

                              tctcCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTc                                                             <  1:764375/100‑1 (MQ=255)

                               ctcCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCa                                                            >  2:540125/1‑100 (MQ=255)

                                tcCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCat                                                           >  2:109091/1‑100 (MQ=255)

                                tcCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCat                                                           <  1:1809496/100‑1 (MQ=255)

                                 ccATTTTTGCTTTTTTATCTACGACAACAACCCTGCAAAAAATGCATACTGTTTAATAGCGTGATCTCTAGCTGCCACGCCAGATTCCTGCTGTTTCatt                                                          >  2:1658977/1‑100 (MQ=255)

                                 ccATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCatt                                                          >  1:1133613/1‑100 (MQ=255)

                                     ttttGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCatttatt                                                      <  1:398518/100‑1 (MQ=255)

                                       ttGCTTTTTCATGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTc                                                    <  2:1181881/100‑1 (MQ=255)

                                        tGCTTTTTCAGGGACTACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCa                                                   <  1:2366107/100‑1 (MQ=255)

                                        tGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCa                                                   >  1:511998/1‑100 (MQ=255)

                                         gCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAg                                                  >  2:906747/1‑100 (MQ=255)

                                         gCTTTTTCAGGGAAGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAg                                                  <  2:1201742/100‑1 (MQ=255)

                                          cTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCCGGGTAGTTCCCTGCTGTTTCatttattt                                                     >  1:2346592/1‑96 (MQ=255)

                                          cTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTGTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGa                                                 <  2:1488663/100‑1 (MQ=255)

                                           tttttCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGAt                                                <  1:1154177/100‑1 (MQ=255)

                                           tttttCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGAt                                                >  1:664708/1‑100 (MQ=255)

                                           tttgggaGGGACGGCGACAGCCCTGCAAAAAATGCAGGTGAGTGTGTAGTGTGGTTATTAGCTGGGAGGGGAGTGCCCGGGTGTTTCATTTATTTCAg                                                  <  2:1689044/92‑1 (MQ=255)

                                            ttttCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGAtt                                               <  1:970544/100‑1 (MQ=255)

                                            ttttCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGAtt                                               >  2:1473985/1‑100 (MQ=255)

                                             tttCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGAttc                                              >  1:2402935/1‑100 (MQ=255)

                                                cAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGAttcttt                                           >  2:367385/1‑100 (MQ=255)

                                                cAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGAttcttt                                           >  2:545616/1‑100 (MQ=255)

                                                cAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTGTAGAGCGTGATGATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGAttcttt                                           >  1:2286342/1‑100 (MQ=255)

                                                cAGGGACGACAACATCACTACAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGATGTTTCATTTATTTCAGAttattt                                           >  2:260815/1‑100 (MQ=255)

                                                  gggACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGAttctttct                                         <  1:1975005/100‑1 (MQ=255)

                                                  gggACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGAttctttct                                         <  1:2054782/100‑1 (MQ=255)

                                                  gggACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGAttctttat                                         <  1:1614565/100‑3 (MQ=255)

                                                   ggACGACAACATCCCTGCAAAAAATGAATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTa                                        >  2:76949/1‑100 (MQ=255)

                                                    gtctacaacaTCCCTGTAAGTACTGTCTATTGGTTTTGAGCGTGATTATTTGCTCGCTGGGTAGTTCTCTTTTGTTTCATTTATTTCAGAgtctt                                            <  2:373374/91‑1 (MQ=255)

                                                       gacAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAatta                                    <  2:1008630/100‑1 (MQ=255)

                                                         caacaTCCCTGCAAAAAATGCATAATGTTTTAGAGCGTGATTATTAGCTAGCAGGGTAGTTCCCTGCTGTTTCATTTATTTAAGATTATTTCTAattatt                                  >  2:1079392/1‑100 (MQ=255)

                                                            caTCCCTGCAAAAAATGCATATTGTTTTAGAGCGTTATTATTATCTTGCAGTGTAGTTCCCTGCTGTTTCATTTATTTCATATTCTTTCTAATTATTTTc                               <  2:981818/100‑1 (MQ=255)

                                                            caTCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTc                               >  2:1848849/1‑100 (MQ=255)

                                                             aTCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTcc                              <  2:1389543/100‑1 (MQ=255)

                                                               cccTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTcccc                            >  2:1365236/1‑100 (MQ=255)

                                                                ccTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCg                           <  2:37683/100‑1 (MQ=255)

                                                                  tGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAg                         <  1:1475801/100‑1 (MQ=255)

                                                                  tGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAg                         <  1:2200057/100‑1 (MQ=255)

                                                                   gCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAGc                        >  2:375105/1‑100 (MQ=255)

                                                                    cAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAGCa                       <  1:2363955/100‑1 (MQ=255)

                                                                    cAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAGCa                       <  2:664702/100‑1 (MQ=255)

                                                                       aaaaTGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAGCAAtt                    >  1:2026925/1‑100 (MQ=255)

                                                                        aaaTGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAGCAATTa                   <  2:2042168/100‑1 (MQ=255)

                                                                          aTGCATATTGTTTTAGCGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAGCAATTa                   <  2:1210056/98‑1 (MQ=255)

                                                                            gCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAGCAATTACGt                >  2:249630/1‑99 (MQ=255)

                                                                            gCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAGCAATTACGTg               >  1:2121282/1‑100 (MQ=255)

                                                                             cATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAGCAATTACGTgg              >  2:1782383/1‑100 (MQ=255)

                                                                             cATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAGCAATTACGTgg              >  1:1657946/1‑100 (MQ=255)

                                                                               tatTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAGCAATTACGTGGCa            >  1:442614/1‑100 (MQ=255)

                                                                                atTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAGCAATTACGTGGCAg           >  2:690931/1‑100 (MQ=255)

                                                                                 ttGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAGCAATTACGTGGCAGa          <  2:2240567/100‑1 (MQ=255)

                                                                                  tGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCTAGCAATTACGTGGCAGAt         <  2:1385729/100‑1 (MQ=255)

                                                                                   gTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCCGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAGCAATTACGTGGCAGATc        <  2:1300339/100‑1 (MQ=255)

                                                                                   gTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCACTGCTGTTTCATTTATTTCAGATTATTTCTAATTATTTTCCCCGATCAATTACGTGGCAgtt         >  2:2116139/1‑97 (MQ=255)

                                                                                   gTTTTAGAGCGTGATTAATAACTGGAAGGGTAGTTACCTACTGTTTCATTTATTTCAGATTCTTTCTAATAATTTTCCCCGAGAAATTACTTGGCAGAt         >  2:119861/1‑99 (MQ=255)

                                                                                    ttttAGAGCGTGATTATGAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAGCAATTACGTGGCAGATCt       >  2:1716244/1‑100 (MQ=255)

                                                                                    ttttACAGCGTGATTATAAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAGCAATTACGTGGCAGATc        >  2:1013867/1‑99 (MQ=255)

                                                                                     tttAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAGCAATTACGTGGCAGATCtt      <  1:1737641/100‑1 (MQ=255)

                                                                                     tttAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAGCAATTACGTGGCAGATCtt      <  2:2056841/100‑1 (MQ=255)

                                                                                       tAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAGCAATTACGTGGCAGATCtttt    <  1:317253/100‑1 (MQ=255)

                                                                                        agagCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTGTTTCTAATTATTTTCCCCGAGCAATTACGTGGCAGATCTTTTc   >  2:1532202/1‑100 (MQ=255)

                                                                                        agagCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAGCAATTACGTGTCAGATCTTTTc   <  2:1843127/100‑1 (MQ=255)

                                                                                         gagCGTTATGATTAGCTTGCATGTTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAGCAATTACGTGGCAGATCTTTTCt  <  2:1546635/100‑1 (MQ=255)

GGTCAGATGTAATGATTCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGTGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAGCAATTACGTGGCAGATCTTTTCT  >  NC_000913/36139‑36327

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`