Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_000913	882,722	G→A	100%	R5C (CGC→TGC)	deoR ←	deoxyribose‑5‑phosphate‑inducible deoxyribose operon transcriptional repressor; repressor of nupG and tsx

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	882,722	0	G	A	100.0%	257.9 / ‑6.7	81	R5C (CGC→TGC)	deoR	deoxyribose‑5‑phosphate‑inducible deoxyribose operon transcriptional repressor; repressor of nupG and tsx
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base A (36/44);  minor base T (0/1);  total (36/45)

GTCATCTCCGAAACCCCAAGCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCGACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCACCCAGCCTTTGCGG  >  NC_000913/882625‑882816                                                                                                  |                                                                                               gTCATCTCCGAAACCCCAAGCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAAc                                                                                              >  1:489195/1‑100 (MQ=255) gTCATCTCCGAAACCCCAAGCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAAc                                                                                              <  1:353319/100‑1 (MQ=255)  tCATCTCCGAAACCCCAAGCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACg                                                                                             <  2:1417223/100‑1 (MQ=255)    aTCTCCGAAACCCCAAGCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACgt                                                                                            >  1:598463/1‑99 (MQ=255)      ctcCGAAACCCCAAGCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGtt                                                                                         >  1:2233446/1‑100 (MQ=255)        ccGAAACCCCAAGCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTc                                                                                       >  2:2042509/1‑100 (MQ=255)         cGAAACCCCAAGCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTcc                                                                                      <  1:803759/100‑1 (MQ=255)           aaaCCCCAAGCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCa                                                                                     <  1:2211253/99‑1 (MQ=255)           aaaCCCCAAGCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCAt                                                                                    <  1:1906530/100‑1 (MQ=255)             aCCCCAAGCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATCCGCTCTTCGCAACGTGTTTCCATaa                                                                                  >  2:815412/1‑100 (MQ=255)              ccccAAGCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAAt                                                                                 >  1:1557373/1‑100 (MQ=255)               cccAAGCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATc                                                                                <  2:656279/100‑1 (MQ=255)               cccAAGCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATc                                                                                >  2:1548040/1‑100 (MQ=255)               ccaaaGCAGGGCGGCGGCGCCTTTAAGATGTAACTTATCGCTACGTTATAACTCTTGCAGCAGCTGCCCGATACGCACTACGCAACGTGATTCCatcatc                                                                                >  2:81190/4‑100 (MQ=255)                ccAAGCAGGGCGTCGGCGTCGTTAAGATGTAACTTATCGCTGCGGTTTGATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATc                                                                                <  1:1112837/99‑1 (MQ=255)                ccAAGCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATcc                                                                               >  2:1366740/1‑100 (MQ=255)                   aGCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCctc                                                                            >  1:1434963/1‑100 (MQ=255)                    gCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCctct                                                                           <  1:2079270/100‑1 (MQ=255)                     cAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTg                                                                          <  1:815421/100‑1 (MQ=255)                     cAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTg                                                                          >  2:636696/1‑100 (MQ=255)                         gcggcggcgTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAAt                                                                       <  2:1878306/99‑1 (MQ=255)                         gcggcggcgTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATa                                                                      >  1:1049604/1‑100 (MQ=255)                           ggcggcgTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTACATAATCCCTCTGAATAGt                                                                    >  2:528121/1‑100 (MQ=255)                              ggcgTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTAt                                                                 >  1:2291692/1‑100 (MQ=255)                              ggcgTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTAt                                                                 >  1:395834/1‑100 (MQ=255)                              ggcgTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTAt                                                                 >  1:728151/1‑100 (MQ=255)                               gcgTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTAtt                                                                <  2:691950/100‑1 (MQ=255)                               gcgTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTAt                                                                 <  1:374526/99‑1 (MQ=255)                               gcgTCTTTAAGATGTAACTTATCGCTGCGGTTTAAGTCTTGCAGTAGCTGCCCGATACGCTCGTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTa                                                                  <  2:1618017/98‑1 (MQ=255)                                 gTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGa                                                              >  1:1955950/1‑100 (MQ=255)                                   cTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAg                                                            >  1:2145232/1‑100 (MQ=255)                                   cTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAg                                                            <  1:6376/100‑1 (MQ=255)                                        gatcttAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGc                                                       <  2:1158753/95‑1 (MQ=255)                                        aGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGc                                                       <  2:2191763/100‑1 (MQ=255)                                         gATGTAACTTATCGCTGCGAATTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTAAAGCGAGc                                                       >  2:562820/1‑99 (MQ=255)                                          aTGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCTTCTTAATAGTTATTGAAGCGAGc                                                       <  2:1083409/98‑1 (MQ=255)                                           tGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGc                                                    <  2:1147219/100‑1 (MQ=255)                                            gTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCt                                                   >  1:1688850/1‑100 (MQ=255)                                            gTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCt                                                   >  1:1524612/1‑100 (MQ=255)                                             tAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGcagatc                                                  >  1:1158764/1‑95 (MQ=255)                                              aaCTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTc                                                  <  2:544317/99‑1 (MQ=255)                                               aCTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCACCGTGTTTCCATACTCCCTCTGAATAGTTATTGAAACGAACCGCTCaa                                                >  1:1630391/1‑100 (MQ=255)                                                   aTCGCTGCGTTTTAATTCTTGCAGCATCTTCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAAtact                                            <  2:225366/100‑1 (MQ=255)                                                    tCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAAtacta                                           >  2:1666241/1‑100 (MQ=255)                                                     cGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAAtactac                                          <  1:1399766/100‑1 (MQ=255)                                                     cGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAAtactac                                          <  2:2291666/100‑1 (MQ=255)                                                     cGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAAtactac                                          <  1:1841105/100‑1 (MQ=255)                                                      gCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTaca                                         >  1:55509/1‑100 (MQ=255)                                                      gCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTaca                                         <  2:100249/100‑1 (MQ=255)                                                       cTGCGTTTTAATTCTTGCAGCAGCTGCCCGATCCGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTacac                                        >  1:2276440/1‑100 (MQ=255)                                                       cTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTacac                                        <  2:1934490/100‑1 (MQ=255)                                                       cTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTacac                                        >  2:719947/1‑100 (MQ=255)                                                             tttAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTa                                  <  1:119570/100‑1 (MQ=255)                                                              ttAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAg                                 <  2:59805/100‑1 (MQ=255)                                                                aaTTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCACACAAAAATACACATTTTaaaa                               >  1:600517/1‑97 (MQ=255)                                                                 aTTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCag                              <  2:1290112/100‑1 (MQ=255)                                                                 aTTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCag                              <  2:2366151/100‑1 (MQ=255)                                                                  ttCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCaga                             <  1:1366754/100‑1 (MQ=255)                                                                  ttCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCaga                             <  2:296452/100‑1 (MQ=255)                                                                  ttCTTGCAGCAGCTGCACGATACGCTCTTCTCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCaga                             >  2:128853/1‑100 (MQ=255)                                                                    cTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCagag                            >  1:1770188/1‑99 (MQ=255)                                                                    cTTGCAGCAGCCGACCGATACGCTCTTCGCAACGTCTTTCCCAACTCTCTCCGAATAGTCATTGAAGCGCGCCGCTCACTACTACACGTGTTAGCatat                            <  2:2003344/99‑4 (MQ=255)                                                                     ttGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGAt                          >  1:195814/1‑100 (MQ=255)                                                                      tGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATc                         <  1:1296146/100‑1 (MQ=255)                                                                       gcagcaGCTGCCCGATACGCTCTTCGCAACGTGGGTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTCAGCAGAGATc                         >  2:2287488/1‑99 (MQ=255)                                                                        cagcagCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAg                       <  1:2258510/100‑1 (MQ=255)                                                                        cagcagCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAg                       <  2:653589/100‑1 (MQ=255)                                                                        cagcagCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAg                       >  1:463395/1‑100 (MQ=255)                                                                              cTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGc                 >  2:235825/1‑100 (MQ=255)                                                                              cTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGc                 <  2:308036/100‑1 (MQ=255)                                                                                 cccGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCAcc              <  1:1824378/100‑1 (MQ=255)                                                                                 cccGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCAcc              <  2:2121148/100‑1 (MQ=255)                                                                                  ccGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCAccc             >  2:1889965/1‑100 (MQ=255)                                                                                    gATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCACCCAg           <  2:2058526/100‑1 (MQ=255)                                                                                      tACGCTCTTCGCTACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCACGCAGcc         <  2:489192/100‑1 (MQ=255)                                                                                        cGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCACCCAGCCtt       <  1:1484984/100‑1 (MQ=255)                                                                                           tctTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCACCCAGCCTTTGc    <  2:1065457/100‑1 (MQ=255)                                                                                           tctTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCACCCAGCCTTTGc    <  2:2069025/100‑1 (MQ=255)                                                                                            ctTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCACCCATCCTTTGCg   >  2:518774/1‑100 (MQ=255)                                                                                            ctTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCACCCAGCCTTTGcn   <  1:2136153/100‑2 (MQ=255)                                                                                             ttCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCACCCAGCCTTTGCgg  <  2:633692/100‑1 (MQ=255)                                                                                                  |                                                                                               GTCATCTCCGAAACCCCAAGCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCGACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCACCCAGCCTTTGCGG  >  NC_000913/882625‑882816

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑