| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,420,727 | G→A | 24.8% | G36D (GGC→GAC) | yfcG → | GSH‑dependent disulfide bond oxidoreductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,420,727 | 0 | G | A | 24.8% | 143.9 / 40.4 | 78 | G36D (GGC→GAC) | yfcG | GSH‑dependent disulfide bond oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base G (31/27); new base A (13/6); total (45/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.95e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATCTCTATTTCGCCCCGACACCCAATGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTGCCGATGGCGGCGAACCGCTAAGCCT > NC_000913/2420628‑2420826 | atcTCTATTTCGCCCCGACACCCAATGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAgg < 1:2180550/100‑1 (MQ=255) tctcTATTTCGGCCCGACACCCAATGGTCAAAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAggg < 2:530307/100‑2 (MQ=255) tctcTATTTCGCCCCGACACCCAATGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGc < 1:630641/100‑1 (MQ=255) ctctATTTCGCCCCGACACCCAATGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCg > 1:1007909/1‑100 (MQ=255) tctATTTCGCCCCGACACCCAATGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCgg < 2:1699513/100‑1 (MQ=255) ctATTTCGCCCCGACACCCAATGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGACGGt < 1:71672/100‑1 (MQ=255) tATTTCGCCCTGACACCCAATGGTTACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTc < 1:9183/100‑1 (MQ=255) aTTTCGCCCCGACACCCAATGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCa > 1:1540216/1‑100 (MQ=255) ttCGCCCCGACACCCAATGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGACGGTCAGt > 1:2202869/1‑100 (MQ=255) tCGCCCCGACACCCAATGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGtt > 1:267226/1‑100 (MQ=255) gCCCCGACACCCAATGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTc > 1:2134536/1‑100 (MQ=255) tccGACATCCAATGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCg < 1:202322/98‑1 (MQ=255) ccGACACCCAATGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTc > 2:1696712/1‑100 (MQ=255) ccGACACCCAATGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTc > 1:1734536/1‑100 (MQ=255) gACACCCAATGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCg < 1:502625/100‑1 (MQ=255) gACACCCAATGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCg < 1:1933957/100‑1 (MQ=255) gACACCCAATGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCg < 1:868686/100‑1 (MQ=255) gACACCCAATGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCg < 1:1475653/100‑1 (MQ=255) acacCCAATGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCgg > 2:2282264/1‑100 (MQ=255) acacCCAATGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCgg < 2:931178/100‑1 (MQ=255) acacCCAATGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGACGGTCAGTTTCGTCCgg < 1:2342630/100‑1 (MQ=255) cacCCAATGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCgta > 1:1236307/1‑98 (MQ=255) cccAATGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAAt > 2:1735749/1‑100 (MQ=255) cccAATGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAAt > 2:405972/1‑100 (MQ=255) ggTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTTGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGACTGTCAGTTTCGTCCGGAATTTTTg < 2:2154864/99‑1 (MQ=255) gTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGGTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTgcg < 2:1083824/100‑1 (MQ=255) gTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTgcg < 2:1107551/100‑1 (MQ=255) cacaAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCa > 2:559301/1‑100 (MQ=255) cacaAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTAGGGAACGGCGGTCAGTTTCGTCCGGAATTTTTGCGCa > 2:1614171/1‑100 (MQ=255) caAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGCAGGTCAGTATCGTCCGGAATTTTTGCGCAtt > 2:1614188/1‑100 (MQ=255) aTTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGc < 2:1773846/100‑1 (MQ=255) ttACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGcc < 1:2169225/100‑1 (MQ=255) tACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGccc < 1:1244430/100‑1 (MQ=255) aCGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCca < 1:541128/100‑1 (MQ=255) aCGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCca < 2:1823354/100‑1 (MQ=255) cGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGACGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCcaa > 1:1942450/1‑100 (MQ=255) ccgatcttcGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCcaaca < 1:798447/93‑1 (MQ=255) cTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCcaaca > 2:153502/1‑100 (MQ=255) cTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGACGGTCAGTTTCGTCCGGAATTTTTGCGCATTTAGCCcaaca > 1:145063/1‑100 (MQ=255) tGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCcaac < 1:1825764/98‑1 (MQ=255) gTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCcaacaac > 2:201621/1‑100 (MQ=255) gTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCcaacaac < 2:1734515/100‑1 (MQ=255) ttCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGACGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCcaacaacaa < 1:232838/100‑1 (MQ=255) tcGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCcaacaaggtcgg > 2:798438/1‑94 (MQ=255) tcGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGACGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAAt > 1:670419/1‑100 (MQ=255) gaagaaGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTc > 1:1600551/1‑100 (MQ=255) agCAGAGCTGGATTATCGCTTGATTAAGATAGACCTGGGGAAAGACGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCa > 2:1066334/1‑100 (MQ=255) cAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCaa > 2:2084206/1‑99 (MQ=255) cAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAAt > 1:2262774/1‑100 (MQ=255) cAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAAt > 2:37239/1‑100 (MQ=255) cAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAAt > 2:1732480/1‑100 (MQ=255) agCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAAttgt < 1:1849626/100‑1 (MQ=255) gCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGACGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAAttgtt > 2:460793/1‑100 (MQ=255) ggATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGAt < 2:1007898/100‑1 (MQ=255) ggATTATCGCTTGATTAAGGTAGACCTGGGGAAAGACGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGAt > 1:160807/1‑100 (MQ=255) aTTATCGCTTGATTAAGGTAGACCTGGGGAAAGACGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCa < 1:316762/100‑1 (MQ=255) aTCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATtc > 2:889689/1‑100 (MQ=255) tCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATtct < 2:267223/100‑1 (MQ=255) tCGCTTGATTAAGGTAGACCTGGGGAAAGACGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATtc > 2:2113294/1‑99 (MQ=255) gCTTGATTAAGGTAGACCTGGGGAAAGACGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTcc > 2:732568/1‑100 (MQ=255) ttGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTg < 1:186951/100‑1 (MQ=255) tGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTg > 1:767530/1‑99 (MQ=255) tGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTGc < 1:535556/100‑1 (MQ=255) tGATTAAGGTAGACCTGGGGAAAGACGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTGc > 2:162810/1‑100 (MQ=255) gATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTGcc > 2:74360/1‑100 (MQ=255) aTTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTGCCg > 2:166492/1‑100 (MQ=255) aTTAAGGTAGACCTGGGGAAAGACGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTGCCg > 1:782476/1‑100 (MQ=255) ggTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTGCCGATggc > 2:2289627/1‑100 (MQ=255) aGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTGCCGATggcggc < 1:1696732/100‑1 (MQ=255) aGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTGCCGATggcggc < 1:405975/100‑1 (MQ=255) gACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTGCCGATGgcggcg > 2:1228905/1‑100 (MQ=255) gACCTGGGGAAAGACGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTGACGATGgcggcg > 1:127805/1‑100 (MQ=255) cTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTGCCGATGGCGGCGAAc < 2:956771/100‑1 (MQ=255) cTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTGCCGATGGCGGCGAAc > 1:936328/1‑100 (MQ=255) tGGGGAAAGACGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTGCCGATGGCGGCGAAcc > 1:254210/1‑100 (MQ=255) ggggAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTGCCGATGGCGGCGAACCg > 1:63856/1‑100 (MQ=255) ggggAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTGCCGATGGCGGCGAACCg > 1:1036912/1‑100 (MQ=255) ggAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTGCCGATGGCGGCGAACCGCt > 1:954193/1‑100 (MQ=255) gAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTGCCGATGGCGGCGAACCGCTa > 1:1291353/1‑100 (MQ=255) aaGACGGTCAGTTTCTGCCGGAATTTTTGCGCATTTCGCCCAACATCAAAATTCCGGCAATTGTTGATCATTCTCCTGCCGATGGCGGCGAACCGCTAAg < 2:2263723/100‑1 (MQ=255) gCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTGCCGATGGCGGCGAACCGCTAAGCct > 1:1379800/1‑100 (MQ=255) | ATCTCTATTTCGCCCCGACACCCAATGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTGCCGATGGCGGCGAACCGCTAAGCCT > NC_000913/2420628‑2420826 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |