| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,665,195 | (T)7→8 | intergenic (+75/‑120) | dmsD → / → clcB | twin‑argninine leader‑binding protein for DmsA and TorA/H(+)/Cl(‑) exchange transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,665,188 | 1 | . | T | 95.3% | 142.1 / ‑0.1 | 43 | intergenic (+68/‑127) | dmsD/clcB | twin‑argninine leader‑binding protein for DmsA and TorA/H(+)/Cl(‑) exchange transporter |
| Reads supporting (aligned to +/- strand): ref base . (1/1); new base T (22/19); total (23/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCAC‑G‑TTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATGCATC > NC_000913/1665093‑1665285 | tGTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCAC‑G‑tttt < 2:920741/100‑1 (MQ=255) cgcgGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATATGTTACAGTGTCAC‑G‑ttttttt < 2:1209978/100‑1 (MQ=255) cgcgGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCAC‑G‑ttttttt > 2:215701/1‑100 (MQ=255) cgcgGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCAC‑G‑ttttttt < 2:327479/100‑1 (MQ=255) cgcgGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCAC‑G‑ttttttt < 2:104920/100‑1 (MQ=255) ggTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCAC‑G‑ttttttttat > 1:1121984/1‑97 (MQ=255) gTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCAC‑G‑ttttttttatc > 1:1081556/1‑96 (MQ=255) gTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCAC‑G‑ttttttttatc > 1:297322/1‑96 (MQ=255) gTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCAC‑G‑ttttttttatc < 2:734773/100‑5 (MQ=255) tAAACCGCTGTTTCGTTAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCAC‑GTTTTTTTTAtctc < 1:1250282/100‑1 (MQ=255) tAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCAC‑GTTTTTTTTAtctc < 1:1111697/100‑1 (MQ=255) tAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCAC‑G‑tttttttttatct > 2:849878/1‑94 (MQ=255) aaaCCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCAC‑GTTTTTTTTATctct < 1:1111875/100‑1 (MQ=255) ccGCTGTTTCGATAGGATCACCGTATTATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCAC‑GTTTTTTTTATCTCtt < 2:553688/98‑1 (MQ=255) cGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCAC‑GTTTTTTTTATCTCTTaaa > 2:435768/1‑100 (MQ=255) tGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCAC‑GTTTTTTTTATCTCTTAAAgca < 1:1086646/100‑1 (MQ=255) gTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCAC‑GTTTTTTTTATCTCTTAAAgcac > 1:883227/1‑100 (MQ=255) tttCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCAC‑GTTTTTTTTATCTCTTAAAgcacg > 2:1396535/1‑100 (MQ=255) ggATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCAC‑GTTTTTTTTATCTCTTAAAGCACGCACTGCtt > 1:329255/1‑100 (MQ=255) aCCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCAC‑GTTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCg < 1:1185331/100‑1 (MQ=255) tAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCAC‑GTTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTg > 1:1428968/1‑100 (MQ=255) tatTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCAC‑GTTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGcc < 2:1183265/100‑1 (MQ=255) atTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCAC‑GTTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCct > 2:91552/1‑100 (MQ=255) atTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCAC‑GTTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCct > 2:1465126/1‑100 (MQ=255) ttGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCAC‑GTTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCctc < 1:435770/100‑1 (MQ=255) cGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCAC‑GTTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCtttt > 2:1519591/1‑100 (MQ=255) cGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCAC‑GTTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCttt < 2:607461/99‑1 (MQ=255) ggATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCAC‑GTTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTg > 2:470131/1‑100 (MQ=255) ggTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCAC‑GTTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGc < 1:1314829/100‑1 (MQ=255) cGATTACACGCAATCCGGCAATAATAGGTTACAGTGTCAC‑GTTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAAt > 1:827947/1‑100 (MQ=255) aCGCGCAATCCGGCAATAATAGGTTACAGTGTCACGG‑TTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCg < 2:1249602/100‑1 (MQ=255) cgcgCAATCCGGCAATAATAGGTTACAGTGTCAC‑GTTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGc > 2:596972/1‑100 (MQ=255) gcgcAATCCGGCAATAATAGGTTACAGTGTCAC‑GTTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGcc > 1:204833/1‑100 (MQ=255) aTCCGGCAATAATAGGTTACAGTGTCAC‑GTTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCgtgt < 1:560722/100‑1 (MQ=255) gCAATAATAGGTTACAGTGTCAC‑GTTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCAt > 2:1444489/1‑100 (MQ=255) cAATAATAGGTTACAGTGTCAC‑GTTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCAtt > 2:236489/1‑100 (MQ=255) cAATAATAGGTTACAGTGTCAC‑GTTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCAtt > 2:836496/1‑100 (MQ=255) ataataGGTTACAGTGTCAC‑GTTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGc > 1:1093134/1‑100 (MQ=255) ataataGGTTACAGTGTCAC‑GTTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGc > 1:908461/1‑100 (MQ=255) aataGGTTACAGTGTCAC‑GTTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGccc < 2:1011896/100‑1 (MQ=255) aataGGTTACAGTGTCAC‑GTTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGccc > 2:220580/1‑100 (MQ=255) ataGGTTACAGTGTCAC‑GTTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCa < 1:1396545/100‑1 (MQ=255) taGGTTACAGTGTCAC‑GTTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTTTTTCATTGCCCAt < 2:307436/100‑1 (MQ=255) ggTTACAGTGTCAC‑GTTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCAttt > 2:690883/1‑100 (MQ=255) ggTTACAGTGTCAC‑GTTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCAttt > 2:762188/1‑100 (MQ=255) gTTACAGTGTCAC‑GTTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTc < 2:888358/100‑1 (MQ=255) aCAGTGTCAC‑GTTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTg < 1:470134/99‑1 (MQ=255) aCAGTGTCAC‑GTTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGc < 1:91552/100‑1 (MQ=255) aCAGTGTCAC‑GTTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGc < 2:1495453/100‑1 (MQ=255) cAGTGTCAC‑GTTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCt > 2:1225020/1‑100 (MQ=255) aGTGTCAC‑GTTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTc < 2:329253/100‑1 (MQ=255) gtCAC‑GTTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATg > 2:538447/1‑100 (MQ=255) aC‑G‑TTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATGcttc > 2:923346/1‑100 (MQ=255) | TGTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCAC‑G‑TTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATGCATC > NC_000913/1665093‑1665285 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |