New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 276860857 (0.880)8 (0.130) 8/184 7.4 12.7% intergenic (+35/‑57) yfjP/yfjQ CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein
?NC_000913 = 2768620 57 (0.950)intergenic (+47/‑45) yfjP/yfjQ CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below cutoff threshold.

GACCATTATTCAGGCCGTGCGTTCCTCGGTGGTGTCAGTGGCCCGCGCTGTCTGGGATTTCTTCTTCTGAGTGTTTAATTCTGCCCTATTATTCTCCGAGCCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2768504‑2768608
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccctgCCGCACTTGCGACAGGGCTCGGAGAATAATAGGGCAGAATTAAACACTCAGAAGAAGAAATCCCAGACAGCGCGGGCCACTGACACCACCGAGGAACG  <  NC_000913/2768620‑2768523
                                                                                                                                                                                                           
GACCATTATTCAGGCCGTGCGTTCCTCGGTGGTGTCAGTGGCCCGCGCTGTCTGGGATTTCTTCTTCTGAGTGTTTAATTCTGCCCTATTATTCTCCGAG                                                                                                         >  1:1564537/1‑100
  CCATTATTCAGGCCGTGCGTTCCTCGGTGGTGTCAGTGGCCCGCGCTGTCTGGGATTTCTTCTTCTGAGTGTTTAATTCTGCCCTATTATTCTCCGAGCC                                                                                                       >  2:440005/1‑100
  CCATTATTCAGGCCGTGCGTTCCTCGGTGGTGTCAGTGGCCCGCGCTGTCTGGGATTTCTTCTTCTGAGTGTTTAATTCTGCCCTATTATTCTCCGAGCC                                                                                                       >  2:1247871/1‑100
  CCATTATTCAGGCCGTGCGTTCCTCGGTGGTGTCAGTGACCCGCGCTGTCTGGGATTTCTTCTTCTGAGTGTTTAATTCTGCCCTATTATTCTCCGAGCC                                                                                                       >  1:1031470/1‑100
     TTATTCAGGCCGTGCGTTCCTCGGTGGTGTCAGTGGCCCGCGCTGTCTGGGATTTCTTCTTCTGAGTGTTTAATTCTGCCCTATTATTCTCCGAGCCCTG                                                                                                    <  1:144755/100‑1
      TATTCAGGCCGTGCGTTCCTCGGTGGTGTCAGTGGCCCGCGCTGTCTGGGATTTCTTCTTCTGAGTGTTTAATTCTGCCCTATTATTCTCCGAGCCCTGC                                                                                                   >  2:655012/1‑100
               CGTGCGTTCCTCGGTGGTGTCAGTGGCCCGCGCTGTCTGGGATTTCTTCTTCTGAGTGTTTAATTCTGCCCTATTATTCTCCGAGCCCTGTCGCACTTGC                                                                                          <  2:1246970/100‑1
                     TTCCTCGGTGGTGTCAGTGGCCCGCGCTGGCTGGGATTTCTTCTTCTGAGTGTTTAATTCTGCCCTATTATTCTCCGAGCCCTGCCGCACTTGCGACAGG                                                                                    <  1:835891/100‑1
                              GGTGTCAGTGGCCCGCGCTGTCTGGGATTTCTTCTTCTGAGTGTTTAATTCTGCCCTATTATTCTCCGAGCCCTGCCGCACTTGCGACAGGGCTCGGAGA                                                                           <  1:718369/100‑1
                                             CGCTGTCTGGGATTTCTTCTTCTGAGTGTTTAATTCTGCCCTATTATTCTCCGAGCCCTGCCGCACTTGCGACAGGGCTCGGAGAATAATAGGGCAGAAT                                                            <  1:1119125/100‑1
                                                  TCTGGGATTTCTTCTTCTGAGTGTTTAATTCTGCCCTATTATTCTCCGAGCCCTGCCGCACTTGCGACAGGGCTCGGAGAATAATAGGGCAGAATTAAAC                                                       <  1:303950/100‑1
                                                       GATTTCTTCTTCTGAGTGTTTAATTCTGCCCTATTATTCTCCGAGCCCTGCCGCACTTGCGACAGGGCTCGGAGAATAATAGGGCAGAATTAAACACTCA                                                  <  1:655015/100‑1
                                                              TCTTCTGAGTGTTTAATTCTGCCCTATTATTCTCCGAGCCCTGCCGCACTTGCGACAGGGCTCGGAGAATAATAGGGCAGAATTAAACACTCAGAAGAAG                                           <  1:1123670/100‑1
                                                                                                  AGCCCTGCCGCACTTGCGACAGGGCTCGGAGAATAATAGGGCAGAATTAAACACTCAGAAGAAGAAATCCCAGACAGCGCGGGCCACTGACACCACCGAG       >  1:743951/1‑100
                                                                                                   GCCCTGCCGCACTTGCGACAGGGCTCGGAGAATAATAGGGCAGAATTAAACACTCAGAAGAAGAAATCCCAGACAGCGCGGGCCACTGACACCACCGAGG      >  2:1052439/1‑100
                                                                                                     CCTGCCGCACTTGCGACAGGGCTCGGAGAATAATAGGGCAGAATTAAACACTCAGAAGAAGAAATCCCAGACAGCGCGGGCCACTGACACCACCGAGGAA    <  2:1245239/100‑1
                                                                                                       TGCCGCACTTGCGACAGGGCTCGGAGAATAATAGGGCAGAATTAAACACTCAGAAGAAGAAATCCCAGACAGCGCGGGCCACTGACACCACCGAGGAACG  >  1:1344237/1‑100
                                                                                                                                                                                                           
GACCATTATTCAGGCCGTGCGTTCCTCGGTGGTGTCAGTGGCCCGCGCTGTCTGGGATTTCTTCTTCTGAGTGTTTAATTCTGCCCTATTATTCTCCGAGCCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2768504‑2768608
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccctgCCGCACTTGCGACAGGGCTCGGAGAATAATAGGGCAGAATTAAACACTCAGAAGAAGAAATCCCAGACAGCGCGGGCCACTGACACCACCGAGGAACG  <  NC_000913/2768620‑2768523

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.