New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 51333866 (1.020)8 (0.140) 7/178 7.7 11.5% coding (763/1293 nt) ybaT putative amino acid transporter
?NC_000913 = 513353 64 (1.110)coding (778/1293 nt) ybaT putative amino acid transporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below cutoff threshold.

CACGGGCGTTTCTGGTGGCGATTGGCGTTACCACGTTGCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCATGTGGGTTATGTGATCGTCGTCATCGGCGCTTTACTGGCGACGGCTTCAGCCA  >  NC_000913/513255‑513452
                                                                                                  |                                                                                                   
cACGGGCGTTTCTGGTGGCGATTGGCGTTACCACGTTGCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAata                                                                                                    >  1:466031/1‑100 (MQ=255)
    ggCGTTTCTGGTGGCGATTGGCGTTACCACGTTGCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGcc                                                                                                <  1:1505638/100‑1 (MQ=255)
    ggCGTTTCTGGTGGCGATTGGCGTTACCACGTTGCTTTATATCTCGCTGGCAATGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGcc                                                                                                <  1:27483/100‑1 (MQ=255)
        tttCTGGTGGCGATTGGCGTTACCACGTTGCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATa                                                                                            >  1:1293807/1‑100 (MQ=255)
           cTGGTGGCGATTGGCGTTACCACGTTGCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATAccg                                                                                         >  1:1340198/1‑100 (MQ=255)
             ggtggCGATTGGCGTTACCACGTTGCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATAccgcc                                                                                       >  2:809325/1‑100 (MQ=255)
             ggtggCGATTGGCGTTACCACGTTGCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATAccgcc                                                                                       >  1:1171279/1‑100 (MQ=255)
              gtggCGATTGGCGTTACCACGTTGCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATAccgccg                                                                                      <  1:539796/100‑1 (MQ=255)
                ggCGATTGGCGTTACCACGTTGCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTa                                                                                    >  2:1376801/1‑100 (MQ=255)
                ggCGATTGGCGTTACCACGTTGCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTa                                                                                    >  1:1369336/1‑100 (MQ=255)
                    aTTGGCGTTACCACGTTGCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAgcgc                                                                                <  1:918402/100‑1 (MQ=255)
                       ggCGTTACCACGTTGCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCacg                                                                             >  2:955174/1‑98 (MQ=255)
                           ttACCACGTTGCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGgctgc                                                                         <  1:1394742/100‑1 (MQ=255)
                            tACCACGTTGCTTTATATCTCGCTGGCACTGGTTTTGCTTATCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGgctgct                                                                        >  1:164891/1‑100 (MQ=255)
                            tACCACGTTGCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGgctgct                                                                        <  1:978385/100‑1 (MQ=255)
                              ccACGTTGCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTtc                                                                      >  2:551244/1‑100 (MQ=255)
                               cACGTTGCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTtct                                                                     >  2:45636/1‑100 (MQ=255)
                                aCGTTGCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTtctc                                                                    >  1:208480/1‑100 (MQ=255)
                                aCGTTGCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGACATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTtctc                                                                    >  1:891215/1‑100 (MQ=255)
                                   ttGCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCgc                                                                 <  2:1188922/100‑1 (MQ=255)
                                   ttGCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCg                                                                  <  1:45636/99‑1 (MQ=255)
                                    tGCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCgct                                                                <  1:792114/100‑1 (MQ=255)
                                      cTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCgctgc                                                              >  1:1426483/1‑100 (MQ=255)
                                        ttATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTc                                                            <  2:1013613/100‑1 (MQ=255)
                                        ttATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTc                                                            >  1:1200152/1‑100 (MQ=255)
                                          atatCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCgg                                                          <  1:978204/100‑1 (MQ=255)
                                           tatCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCggg                                                         >  2:1162046/1‑100 (MQ=255)
                                            atCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGc                                                        <  2:331748/100‑1 (MQ=255)
                                             tctcGCTGGCACGGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGcn                                                       <  2:727541/100‑2 (MQ=255)
                                              ctcGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCAt                                                      >  1:1132453/1‑100 (MQ=255)
                                              ctcGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCAt                                                      >  1:602595/1‑100 (MQ=255)
                                               tcGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCAtg                                                     >  1:1476342/1‑100 (MQ=255)
                                                 gCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCAtgcg                                                   <  1:1063719/100‑3 (MQ=255)
                                                   tGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCATGTggg                                                 <  1:1247656/100‑1 (MQ=255)
                                                     gCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGTGCAGGCTGCTTCTCCGCTGCTCGGGCATGTggg                                                 >  2:1157900/1‑98 (MQ=255)
                                                      cACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCATGTGGGTTa                                              <  1:189418/100‑1 (MQ=255)
                                                      cACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCATGTGGGTTa                                              <  2:410458/100‑1 (MQ=255)
                                                      cACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCATGTGGGTTa                                              <  1:1376811/100‑1 (MQ=255)
                                                      cACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCATGTGGGTTa                                              >  1:187212/1‑100 (MQ=255)
                                                          ggTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCATGTGGGTTAtgtg                                          >  1:820328/1‑100 (MQ=255)
                                                           gTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCATGTGGGTTATGTGa                                         <  1:165699/100‑1 (MQ=255)
                                                           gTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCATGTGGGTTATGTGa                                         <  1:1161476/100‑1 (MQ=255)
                                                            ttttGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCATGTGGGTTATGTGAt                                        >  1:1294784/1‑100 (MQ=255)
                                                               tGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCATGTGGGTTATGTGAtcgt                                     >  2:926326/1‑100 (MQ=255)
                                                                  ttAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCATGTGGGTTATGTGATcgtcgt                                  <  1:1346345/100‑1 (MQ=255)
                                                                   ctgCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCATGTGGGTTATGTGAtcgtcn                                   <  2:1298738/96‑2 (MQ=255)
                                                                     ncGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCATGTGGGTTATGTGAtcgtcg                                   >  1:1298747/2‑96 (MQ=255)
                                                                      cGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCATGTGGGTTATGTGATCGTCGTCATc                              <  1:44940/100‑1 (MQ=255)
                                                                       gATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCATGTGGGTTATGTGATCGTCGTCATc                              >  1:1162816/1‑99 (MQ=255)
                                                                       gATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCATGTGGGTTATGTGATCGTCGTCATCg                             <  2:1369327/100‑1 (MQ=255)
                                                                        aTGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCATGTGGGTTATGTGATCGTCGTCATCgg                            <  2:573911/100‑1 (MQ=255)
                                                                          gTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCATGTGGGTTATGTGATCGTCGTCATCGgcg                          >  1:336342/1‑100 (MQ=255)
                                                                           tATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCATGTGGGTTATGTGATCGTCGTCATCGgcgc                         <  1:529482/100‑1 (MQ=255)
                                                                             tCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCATGTGGGTTATGTGATCGTCGTCATCGGCGCtt                       <  2:1066604/100‑1 (MQ=255)
                                                                               ggCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCATGTGGGTTATGTGATCGTCGTCATCGGCGCTTTa                     >  1:884159/1‑100 (MQ=255)
                                                                               ggCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCATGTGGGTTATGTGATCGTCGTCATCGGCGCTTTa                     >  2:1010430/1‑100 (MQ=255)
                                                                               ggCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCATGTGGGTTATGTGATCGTCGTCATCGGCGCTTTa                     >  2:235518/1‑100 (MQ=255)
                                                                                gCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCATGTGGGTTATGTGATCGTCGTCATCGGCGCTTTAc                    >  1:1002379/1‑100 (MQ=255)
                                                                                 cATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCATGTGGGTTATGTGATCGTCGTCATCGGCGCTTTACt                   <  1:1195665/100‑1 (MQ=255)
                                                                                    tAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCATGTGGGTTATGTGATCGTCGTCATCGGCGCTTTACTGGc                >  2:143852/1‑100 (MQ=255)
                                                                                     agagTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCATGTGGGTTATGTGATCGTCGTCATCGGCGCTTTACTGGCg               <  1:624514/100‑1 (MQ=255)
                                                                                          tAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCATGTGGGTTATGTGATCGTCGTCATCGGCGCTTTACTGGCGACGGc          >  1:454644/1‑100 (MQ=255)
                                                                                            gAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCATGTGGGTTATGTGATCGTCGTCATCGGCGCTTTACTGGCGACGGCtt        >  2:877016/1‑100 (MQ=255)
                                                                                            gAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCATGTGGGTTATGTGATCGTCGTCATCGGCGCTTTACTGGCGACGGCtt        >  1:1350733/1‑100 (MQ=255)
                                                                                             aaaaaTATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCATGTGGGTTATGTGATCGTCGTCATCGGCGCTTTACTGGCGACGGCTTc       <  2:336341/100‑1 (MQ=255)
                                                                                                 atatGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCATGTGGGTTATGTGATCGTCGTCATCGGCGCTTTACTGGCGACGGCTTCAGcc   <  1:862157/100‑1 (MQ=255)
                                                                                                 atatGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCATGTGGGTTATGTGATCGTCGTCATCGGCGCTTTACTGGCGACGGCTTCAGcc   <  1:551247/100‑1 (MQ=255)
                                                                                                  tatGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCATGTGGGTTATGTGATCGTCGTCATCGGCGCTTTACTGGCGACGGCTTCAGCCa  <  1:174985/100‑1 (MQ=255)
                                                                                                  |                                                                                                   
CACGGGCGTTTCTGGTGGCGATTGGCGTTACCACGTTGCTTTATATCTCGCTGGCACTGGTTTTGCTTAGCGATGTATCGGCATTAGAGTTAGAAAAATATGCCGATACCGCCGTAGCGCAGGCTGCTTCTCCGCTGCTCGGGCATGTGGGTTATGTGATCGTCGTCATCGGCGCTTTACTGGCGACGGCTTCAGCCA  >  NC_000913/513255‑513452

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.