| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,595,057 | A→C | Y142D (TAC→GAC) | livM ← | branched‑chain amino acid ABC transporter permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,595,057 | 0 | A | C | 98.2% | 206.7 / ‑3.6 | 57 | Y142D (TAC→GAC) | livM | branched‑chain amino acid ABC transporter permease |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base C (24/32); total (25/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.39e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.84e-01 | |||||||||||
TAATCCAGCAATCGGCAGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAACCACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGTGGCAATATCCACC > NC_000913/3594962‑3595148 | tAATCCAGCAATCGGCAGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTCcccc < 2:1315617/100‑1 (MQ=255)tAATCCAGCAATCGGCAGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTCcccc < 1:255358/100‑1 (MQ=255) aTCCAGCAATCGGCAGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTCCCccag > 2:1494603/1‑100 (MQ=255) tCCAGCAATCGGCAGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTCCCccagc > 2:106656/1‑100 (MQ=255) ccAGCAATCGGCAGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTCCCccagca < 2:1207414/100‑1 (MQ=255) cAGCAATCGGCAGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTCCCccagcac > 2:1341120/1‑100 (MQ=255) aGCAATCGGCAGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTCCCccagc < 2:764304/97‑1 (MQ=255) cAATCGGCAGGCAGGT‑CAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTCCCccagcaccagc < 2:423195/100‑1 (MQ=255) aaTCGGCAGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTCCCccagcaccagc < 1:127253/100‑1 (MQ=255) aaTCGGCAGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTCCCccagcaccagc > 1:97833/1‑100 (MQ=255) tCGGCAGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTCCCCCAGCACcagcag < 2:636273/100‑1 (MQ=255) ggcaggcaGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTCCCCCAGCACCAGCAGAc < 2:423917/100‑1 (MQ=255) caggTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTCCCCCAGCACCAGCAGACCAGaaa > 1:1278090/1‑100 (MQ=255) aggTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTCCCCCAGCACCAGCAGACCAGAAAg < 1:106656/100‑1 (MQ=255) aggTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTCCCCCAGCACCAGCAGACCAGAAAg > 1:1040497/1‑100 (MQ=255) ccAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTCCCCCAGCACCAGCAGACCAGAAAGACca > 2:883832/1‑100 (MQ=255) cAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTCCCCCAGCACCAGCAGACCAGAAAGACcaa > 1:320147/1‑100 (MQ=255) cAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTCCCCCAGCACCAGCAGACCAGAAAGACcaa > 2:1194425/1‑100 (MQ=255) cccAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGGTGGCGTAAAAACCGCCGTCCCCCAGCACCAGCAGACCAGAAAGACCAACAAcc < 1:1365029/99‑1 (MQ=255) ccAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTCCCCCAGCACCAGCAGACCAGAAAGACCAACAACCAc > 1:1563733/1‑100 (MQ=255) cAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTCCCCCAGCACCAGCAGACCAGAAAGACCAACAACCACg < 2:1040490/100‑1 (MQ=255) aaGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTCCCCCAGCACCAGCAGACCAGAAAGACCAACAACCACGt < 1:1277168/100‑1 (MQ=255) gCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTCCCCCAGCACCAGCAGACCAGAAAGACCAACAACCACGTTc < 2:1147680/100‑1 (MQ=255) gCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTCCCCCAGCACCAGCAGACCAGAAAGACCAACAACCACGTTc > 1:389233/1‑100 (MQ=255) ccGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTCCCCCAGCACCAGCAGACCAGAAAGACCAACAACCACGTTCa > 1:1139432/1‑100 (MQ=255) ccGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAACCACGTTCa > 1:1198246/1‑100 (MQ=255) acGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTCCCCCAGCACCAGCAGACCAGAAAGACCAACAACCACGTTCa > 2:385547/2‑100 (MQ=255) tAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTCAAAACCGCCGTCCCCCAGCACCAGCAGACCAGAAAGACCAACAACCACGTTCAGcc < 2:1004283/100‑1 (MQ=255) tAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTCCCCCAGCACCAGCAGACCAGAAAGACCAACAACCACGTTCAGcc > 2:1268543/1‑100 (MQ=255) aTAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTCCCCCAGCACCAGCAGACCAGAAAGACCAACAACCACGTTCAGCCCg < 2:1139425/100‑1 (MQ=255) tAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTCCCCCAGCACCAGCAGACCAGAAAGACCAACAACCACGTTCAGCCCga < 1:1164905/100‑1 (MQ=255) gTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTCCCCCAGCACCAGCAGACCAGAAAGACCAACAACCACGTTCAGCCCgaga > 1:172237/1‑100 (MQ=255) gATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTCCCCCAGCACCAGCAGACCAGAAAGACCAACAACCACGTTCAGCCCGAGAcc > 2:74138/1‑100 (MQ=255) gATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTCCCCCAGCACCAGCAGACCAGAAAGACCAACAACCACGTTCAGCCCGAGAcc < 2:4071/100‑1 (MQ=255) aTTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTCCCCCAGCACCAGCAGACCAGAAAGACCAACAACCACGTTCAGCCCGAGACCg < 1:1092449/100‑1 (MQ=255) tGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTCCCCCAGCACCAGCAGACCAGAAAGACCAACAACCACGTTCAGCCCGAGACCGAg < 2:1413250/100‑1 (MQ=255) agcagcGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTCCCCCAGCACCAGCAGACCAGAAAGACCAACAACCACGTTCAGCCCGAGACCGAGGa > 2:425807/1‑100 (MQ=255) agcagcGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTCCCCCAGCACCAGCAGACCAGAAAGACCAACAACCACGTTCAGCCCGAGACCGAGGa > 2:52842/1‑100 (MQ=255) cagcGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTCCCCCAGCACCAGCAGACCAGAAAGACCAACAACCACGTTCAGCCCGAGACCGAGGATa < 2:154751/100‑1 (MQ=255) gcAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTCCCCCAGCACCAGCAGACCAGAAAGACCAACAACCACGTTCAGCCCGAGACCGAGGATAATGt < 1:1313212/100‑1 (MQ=255) aaaaGTGTAAGCGCCGATGGCGTAAAAACCGCCGTCCCCCAGCACCAGCAGACCAGAAAGACCAACAACCACGTTCAGCCCGAGACCGAGGATAATGTAg < 2:325543/100‑1 (MQ=255) gtgtAAGCGCCGATGGCGTAAAAACCGCCGTCCCCCAGCACCAGCAGACCAGAAAGACCAACAACCACGTTCAGCCCGAGACCGAGGATAATGTAGATCa < 2:654431/100‑1 (MQ=255) tgtAAGCGCCGATGGCGTAAAAACCGCCGTCCCCCAGCACCAGCAGACCAGAAAGACCAACAACCACGTTCAGCCCGAGACCGAGGATAATGTAGATCAt < 1:74138/100‑1 (MQ=255) gtAAGCGCCGATGGCGTAAAAACCGCCGTCCCCCAGCACCAGCAGACCAGAAAGACCAACAACCACGTTCAGCCCGAGACCGAGGATAATGTAGATCATg < 1:1140888/100‑1 (MQ=255) aaGCGCTGATGGCGTAAAAACCGCCGTCCCCCAGCACCAGCAGACCAGAAAGACCAACAACCACGTTCAGCCCGAGACCGAGGATAATGTAGATCATgg < 2:320145/99‑1 (MQ=255) gcgcCGATGGCGTAAAAACCGCCGTCCCCCAGCACCAGCAGACCAGAAAGACCAACAACCACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCa > 2:584837/1‑100 (MQ=255) tGGCGTAAAAACCGCCGTCCCCCAGCACCAGCAGACCAGAAAGACCAACAACCACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGTGGc < 2:1077042/100‑1 (MQ=255) cGTAAAAACCGCCGTCCCCCAGCACCAGCAGACCAGAAAGACCAACAACCACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGTGGCAat > 2:1422492/1‑100 (MQ=255) gTAAAAACCGCCGTCCCCCAGCACCAGCAGACCAGAAAGACCAACAACCACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGTGGCAata > 1:1393252/1‑100 (MQ=255) gTAAAAACCGCCGTCCCCCAGCACCAGCAGACCAGAAAGACCAACAACCACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGTGGCAata > 1:786808/1‑100 (MQ=255) aaaaaCCGCCGTCCCCCAGCACCAGCAGACCAGAAAGACCAACAACCACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGTGGCAATATc < 2:1393242/100‑1 (MQ=255) aaaaCCGCCGTCCCCCAGCACCAGCAGACCAGAAAGACCAACAACCACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGTGGCAATATcc > 1:318742/1‑100 (MQ=255) aaaCCGCCGTCCCCCAGCACCAGCAGACCAGAAAGACCAACAACCACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGTGGCAATATCCa > 2:21392/1‑100 (MQ=255) aaCCGCCGTCCCCCAGCACCAGCAGACCAGAAAGACCAACAACCACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGTGGCAATATCCAc < 1:52842/100‑1 (MQ=255) aCCGCCGTCCCCCAGCACCAGCAGACCAGAAAGACCAACAACCACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGTGGCAATATCCAcc < 2:1278081/100‑1 (MQ=255) aCCGCCGTCCCCCAGCACCAGCAGACCAGAAAGACCAACAACCACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGTGGCAATATCCAcc < 1:650663/100‑1 (MQ=255) aCCGCCGTCCCCCAGCACCAGCAGACCAGAAAGACCAACAACCACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGTGGCAATATCCAcc < 2:8013/100‑1 (MQ=255) | TAATCCAGCAATCGGCAGGCAGGTCCAGAAGCCCAAGCCGTAATAGTGATTGAGCAGCGCAAAAGTGTAAGCGCCGATGGCGTAAAAACCGCCGTACCCCAGCACCAGCAGACCAGAAAGACCAACAACCACGTTCAGCCCGAGACCGAGGATAATGTAGATCATGGTCAGGGTGGCAATATCCACC > NC_000913/3594962‑3595148 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |