New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3299608108 (1.000)20 (0.210) 7/158 NT 17.2% coding (308/444 nt) yhbP UPF0306 family protein
?NC_000913 = 3299630 97 (1.010)coding (286/444 nt) yhbP UPF0306 family protein

AGCCAAATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3299500‑3299608
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaaagcgacCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCAAATTCACCGACAAC  <  NC_000913/3299630‑3299532
                                                                                                                                                                                                                
AGCCAAATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCG                                                                                                              >  1:2676430/1‑100
 GCCAAATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGG                                                                                                             >  2:337241/1‑100
 GCCAAATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGAGACCGACAGCATTCTGGCAACCGG                                                                                                             >  1:513853/1‑100
  CCAAATCATTATTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCTCATACCGGGGCCGACAGCATTCTGGCAACCGGA                                                                                                            <  2:2000357/100‑1
   CAAATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAA                                                                                                           <  2:1774838/100‑1
    agATCATTTTTTTACCAAAGCCCAGCTTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCGGGCAACCGGAA                                                                                                           <  1:2327875/97‑1
     AATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAG                                                                                                         <  2:832616/100‑1
     AATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAG                                                                                                         <  1:119671/100‑1
     AATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAG                                                                                                         <  1:1753914/100‑1
      ATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGC                                                                                                        >  2:715976/1‑100
      ATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGC                                                                                                        >  1:2103708/1‑100
       TCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCG                                                                                                       >  1:2677947/1‑100
        nATTTTTTTACCAAAGCCCAACGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGA                                                                                                      >  2:2453005/2‑100
         ATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGAC                                                                                                     >  1:2409001/1‑100
                                       GTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTT                                                                       >  1:2861953/1‑100
                                        TGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTC                                                                      <  2:1746221/100‑1
                                        TGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTC                                                                      <  2:1746168/100‑1
                                        TGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTC                                                                      <  1:575578/100‑1
                                         GAATTTGATTTCATCGAGTCGGATTTCCCATACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCC                                                                     <  1:317311/100‑1
                                         GAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCTTTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCC                                                                     <  1:1834213/100‑1
                                         GAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCC                                                                     <  1:1112827/100‑1
                                         GAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCC                                                                     <  1:2682940/100‑1
                                         GAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCC                                                                     <  2:2019133/100‑1
                                         GAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCC                                                                     <  1:165813/100‑1
                                         GAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCC                                                                     <  1:1638534/100‑1
                                         GAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCC                                                                     <  2:2676398/100‑1
                                         GAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTC                                                                      <  2:1564527/99‑1
                                         GAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTAGAAACCGGAAAGCGTCCTAGCGCGCAAGGTGTACAATCGTCGCTTTCC                                                                     <  2:945801/100‑1
                                           ATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGG                                                                   <  2:2861921/100‑1
                                           ATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGG                                                                   <  2:2443733/100‑1
                                           ATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGG                                                                   <  1:1742966/100‑1
                                            TTTGATTTTATCTAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGT                                                                  <  1:1010259/100‑1
                                               GATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGC                                                               <  1:224556/100‑1
                                                ATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCC                                                              <  1:1395623/100‑1
                                                                                                   GGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCAAATTC           >  1:1821745/1‑100
                                                                                                   GGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCAAATTC           >  2:2325000/1‑100
                                                                                                    GAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAAAATGCTGTCGACCACGACGTGGGAAATCCGGCTCGATGAAATCAAATTCA          >  1:1535228/1‑100
                                                                                                      AAGCGATCTCGCGCGTAAGGCGTACAATCGTCGTTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCAAATTCACC        <  1:1348371/100‑1
                                                                                                      AAGCGACCTCGCGCGTAAGGCGTATAATTGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAAGCCGGCTCGATGAAATCAAATTCACC        <  1:1311684/100‑1
                                                                                                      AAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCAAATTCACC        <  1:310114/100‑1
                                                                                                      AAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCAAGAATGCTGTCGGCCCCGGGGTGGGCAATACGGCTCGATGAAATCAAATTCcgc        >  2:2783881/1‑97
                                                                                                         cgtCCTCTCGCGCAAGTCGTACAATCGTCGTTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCAAATTCACC        <  1:309251/94‑1
                                                                                                          GACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCAAATTCACCGACA    >  2:1915875/1‑100
                                                                                                           ACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCAAATTCACCGACA    <  1:1151157/99‑1
                                                                                                            CCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGAGTGGGAAATCCGACTCGATGAAATCAAATTCACCGACAAC  >  1:778820/1‑100
                                                                                                                                                                                                                
AGCCAAATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3299500‑3299608
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaaagcgacCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCAAATTCACCGACAAC  <  NC_000913/3299630‑3299532

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.