New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4586197	102 (0.940)	7 (0.070)	5/170	NT	6.3%	coding (565/3513 nt)	hsdR	endonuclease R Type I restriction enzyme
	?	NC_000913	= 4586236	110 (1.070)					coding (526/3513 nt)	hsdR	endonuclease R Type I restriction enzyme
Rejected: Frequency below cutoff threshold.

TACGTTCCTGTTCGGTCTGTTTTGCCAGTTCCGCGTTCTTCTCGGCGAGCTGTGCTTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4586095‑4586197 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgGTTGC‑‑‑CCTGAACGGCTATATCGCCATTCTGGAAGGCAAACAGCAGGAAACCGAAGCGCAAACCCAGGCTCGCCTTGCGGCACTGGAAGCACAGCTCGCC  <  NC_000913/4586236‑4586138                                                                                                                                                                                                               TACGTTCCTGTTCGGTCTGTTTTGCCAGTTCCGCGTTCTTCTCGGCGAGCTGTGCTTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTG                                                                                                           <  2:2855202/100‑1  ACGTTCCTTTTCGGTCTGTTTTGCCAGTTCCGCGTTCTTCTCGGCCAGCTGTGCTTCCAGTGCCTCAAGGCGATCCTGGTTTTGTGCTTCGGTTTCCTGC                                                                                                          <  2:544087/100‑1   CGTTCCTGTTCGGTCTGTTTTGCCAGTTCCGCGTTCTTCTCGGCGAGCTGTGCTTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCT                                                                                                         <  2:2835951/100‑1   CGTTCCTGTTCGGTCTGTTTTGCCAGTTCCGCGTTCTTCTCGGCGAGCTGTGCTTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCT                                                                                                         >  2:657363/1‑100     TTCCTGTTCGGTCTGTTTTGCCAGTTCCGCGTTCTTCTCGGCGAGCTGTGCTTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTG                                                                                                        <  2:2710690/99‑1                                         CTCGGCGAGCTGTGCTTCCAGTGCCGCAAGGCGAGCTTGGGTTTGCGCTTCGGTTTCCTGCTGGTTGC‑‑‑CCTGAACGGCTATATCGCCATTCTGGAAGGCA                                                                <  1:1137482/100‑1                                          TCGGCGAGCTGTGCTTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGTTTGCCTTCCAGAACGGCTATATCGCCATTCTGGAAGG                                                                  <  2:1531929/100‑1                                                AGCTGTGCTTCCAGTGCCGCAAGGCGATCCTGTGTTTGCGCTTCGGTTTCCTGCTGGTTGC‑‑‑CCTGAACGGCTATATCGCCATTCTGGAAGGCAAACAGCA                                                         <  1:994826/100‑1                                                AGCTGTGCTTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGGTTGC‑‑‑CCTGAACGGCTATATCGCCATTCTGGAAGGCAAACAGCA                                                         <  2:1465029/100‑1                                                  cttTGCTTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGGTTGC‑‑‑CCTGAACGGCTATATCGCCATTCTGGAAGGCAAACAGCAGG                                                       <  1:2683878/97‑1                                                  CTGTGCTTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGGTTGC‑‑‑CCTGAACGGCTATATCGCCATTCTGGAAGGCAAACAGCAGG                                                       <  2:1125600/100‑1                                                      GCTTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTGGTTGC‑‑‑CCTGAACGGCTATATCGCCATTCTGGAAGGCAAACAGCAGGAAAC                                                   <  1:1786849/100‑1                                                                                                       GGTTGC‑‑‑CCTGAACGGCTATATCGCCATTCTGGAAGGCAAACAGCAGGAAACCGAAGCGCAAACCCAGGCTCGCCTTGCGGCACTGGAAGCACAGCTCGCC  >  1:600224/1‑100                                                                                                       GGTTGC‑‑‑CCTGAACGGCTATATCGCCATTCTGGAAGGCAAACAGCAGGAAACCGAAGCGCAAACCCAGGCTCGCCTTGCGGCACTGGAAGCACAGCTCGCC  >  2:2212752/1‑100                                                                                                       GGTTGC‑‑‑CCTGAACGGCTATATCGCCATTCTGGAAGGCAAACAGCAGGAAACCGAAGCGCAAACCCAGGCTCGCCTTGCGGCACTGGAAGCACAGCTCGCC  >  2:2915006/1‑100                                                                                                                                                                                                               TACGTTCCTGTTCGGTCTGTTTTGCCAGTTCCGCGTTCTTCTCGGCGAGCTGTGCTTCCAGTGCCGCAAGGCGAGCCTGGGTTTGCGCTTCGGTTTCCTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4586095‑4586197 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgGTTGC‑‑‑CCTGAACGGCTATATCGCCATTCTGGAAGGCAAACAGCAGGAAACCGAAGCGCAAACCCAGGCTCGCCTTGCGGCACTGGAAGCACAGCTCGCC  <  NC_000913/4586236‑4586138

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.