New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 315646NA (NA)14 (0.140) 8/168 NT NA noncoding (418/1255 nt) IS3 repeat region
?NC_000913 = 315665 NA (NA)noncoding (437/1255 nt) IS3 repeat region

GCTATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCC‑‑‑‑GC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/315543‑315646
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcc‑‑‑‑gcTGCGGGCCACCCGGAGCACGCGGCACATTGCTT  <  NC_000913/315665‑315633
                                                                                                                                             
GCTATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAGATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTG                                           <  2:1944724/100‑1
GCTATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTG                                           <  2:1440229/100‑1
GCTATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTG                                           <  2:1551673/100‑1
GCTATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTG                                           <  1:2515161/100‑1
 nTATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGC                                          >  2:2167979/2‑100
 CTATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGC                                          >  2:99748/1‑100
 CTATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGC                                          >  2:175657/1‑100
 CTATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGC                                          <  2:2878295/100‑1
 CTATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGC                                          >  1:513087/1‑100
 CTATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGC                                          <  1:1893278/100‑1
 CTATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATAAGGCTGAGTTCAGCATCAAAGCAATGTGC                                          >  1:590620/1‑100
  TATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCC                                         >  2:617264/1‑100
  TATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCC                                         >  1:1052509/1‑100
  TATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCC                                         >  2:920348/1‑100
  TATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATGGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCC                                         <  2:809922/100‑1
   ATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCC                                         >  1:711308/1‑99
   ATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACAACAGGCTGAGTTCAGCATCAAAGCAATGTGCC‑‑‑‑G                                    <  2:2278665/100‑1
    TCCTCCAAAAGGCCGCGACATACTTCGTGAAGCTCTTTAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCC‑‑‑‑GC                                   <  1:1580484/100‑1
    TCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAATACATCAGGATGATTTCAGCATCAAAGCAATGTGCC‑‑‑‑GC                                   <  2:85165/100‑1
    TCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCC‑‑‑‑GC                                   >  1:713667/1‑100
    TCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCC‑‑‑‑GC                                   >  2:2114768/1‑100
    TCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCC‑‑‑‑G                                    >  2:718628/1‑99
     CCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCC‑‑‑‑GC                                   >  2:1284359/1‑99
      CTCCAAAAGTCCGAGAAATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAAGCTAAGTTAAGCATCAAAGCAATGTG                                           <  2:2533030/94‑1
      CTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGATCAGCATCAAAGCAATGTGCC‑‑‑‑GC                                   >  1:1333377/1‑98
         CAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTAGTTATTAAAAAACATCAGGCTGAGTTAAGCATCAAAGAAATGTGactcgt                                     >  2:2482656/1‑91
                             CGCGAAGCGCCTGAAGTGAAGTATGTCTTTATGGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCC‑‑‑‑GCTGCGGGCCACCCGGAGCACGCGGCA          <  2:1714455/100‑1
                             CGCGAAGCGCCTGAAATGAAGTATGTTTTTATTGAAAAACATCAGGCTGAGTTTAGCATCAAAGCAATGTGCC‑‑‑‑GCTGCGGGCCACCCGGAGCACGCGGCA          <  1:756516/100‑1
                             CGCGAAGCGCCTGAAATGAAGTATGTTTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCC‑‑‑‑GCTGCGGGCCACCCGGAGCACGCGGCA          <  1:1371550/100‑1
                             CGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCC‑‑‑‑GCTGCGGGCCACCCGGAGCACGCGGCA          <  1:747205/100‑1
                             CGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCC‑‑‑‑GCTGCGGGCCACCCGGAGCACGCGGCA          <  1:696532/100‑1
                             CGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCC‑‑‑‑GCTGCGGGCCACCCGGAGCACGCGGCA          <  2:1421479/100‑1
                             CGCCAAGCGCCTGAAATGAAGGATCTCTTTATTCAAAAACATCAGCCTGAGTTCAGCATCAAAGCAATGTGCC‑‑‑‑GCTGCAGGCCACCCGGAGCACGCGGC           <  2:2683682/99‑1
                              GCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCC‑‑‑‑GCTGCGGGCCACCCGGAGCACGCGGCAC         <  1:2425173/100‑1
                               CGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAATCATCAGGCTGAGTTCAGCATCAAAGCAATGTGCC‑‑‑‑GCTGCGGGCCACCCGGAGCACGCGGCACA        <  1:94286/100‑1
                               CGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCCGCGTGCTGCGGGCCACCCGGAGCACGCGG            <  1:1192158/100‑1
                                GAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCCGCGTGCTGCGGGCCACCCGGAGCACGCGGC           <  1:808683/100‑1
                                  AGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCC‑‑‑‑GCTGCGGGCCACCCGGAGCACGCGGCACATTG     <  1:1168444/100‑1
                                    CGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCC‑‑‑‑GCTGCGGGCCACCCGGAGCACGCGGCACATTGCT   <  1:1562944/100‑1
                                     GCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCC‑‑‑‑GCTGCGGGCCACCCGGAGCACGCGGCACATTGCTT  <  2:1006377/100‑1
                                                                                                                                             
GCTATCCTCCAAAAGGCCGCGACATACTTCGCGAAGCGCCTGAAATGAAGTATGTCTTTATTGAAAAACATCAGGCTGAGTTCAGCATCAAAGCAATGTGCC‑‑‑‑GC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/315543‑315646
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcc‑‑‑‑gcTGCGGGCCACCCGGAGCACGCGGCACATTGCTT  <  NC_000913/315665‑315633

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.