New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 705938	NA (NA)	11 (0.110)	7/166	NT	NA	intergenic (+48/‑155)	nagE/glnS	N‑acetyl glucosamine specific PTS enzyme IIC, IIB, and IIA components/glutamyl‑tRNA synthetase
	?	NC_000913	= 705965	NA (NA)					intergenic (+75/‑128)	nagE/glnS	N‑acetyl glucosamine specific PTS enzyme IIC, IIB, and IIA components/glutamyl‑tRNA synthetase

GGGCCATATTGTGGCGGGTCAAACACCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCCTGATGCGACGCTTGAGCGTCGCATCCAACAATGACaagcgg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/705842‑705938 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAGCGGCAGAGAAGATCTCCACCGCTTGTCATTGTTGGATGCGACGCTCAAGCGTCGCATCAGGCATAAAGCAGATTACTTTTTGATTTCATACAGCGGTGTTTG  <  NC_000913/705965‑705861                                                                                                                                                                                                            GGGCCATATTGTGGCGGGTCAAACACCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCCTGATGCGACGCTTGAGCGTCGCATCCAACAATGACAAG                                                                                                        >  1:627290/1‑100  GGCCATATTGTGGCGGGTCAAACACCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCCTGATGCGACGCTTGAGCGTCGCATCCAACAATGACAAGC                                                                                                       >  1:733954/1‑100  GGCCATATTGTGGCGGGTCAAACACCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCCTGATGCGACGCTTGAGCGTCGCATCCAACAATGACAAGC                                                                                                       <  1:414374/100‑1   GCCATATTGTGGCGGGTCAAACACCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCCTGATACAACGCTTGAGCGTCGCATCCAACAATGACAAGCG                                                                                                      >  1:344027/1‑100    CCATATTGTGGCGGGTCAAACACCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCCTGATGCGACGCTTGAGCGTCGCATCCAACAATGACAAGCGG                                                                                                     >  1:998135/1‑100    CCATATTGTGGCGGGTCAAACACCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCCTGATGCGACGCTTGAGCGTCGCATCCAACAATGACAAGCGG                                                                                                     <  1:2957846/100‑1                        CACCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCTTGATTTGACGCTTGAGCGTCGCATCCAACAATGACAAGCGGCAGAGAAGATCTCCACCGCT                                                                                 <  1:78888/100‑1                        CACCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCCTGATGCGACGCTTGAGCGTCGCATCCAACAATGACAAGCGGCAGAGAAGATCTCCACCGCT                                                                                 <  1:2728716/100‑1                         ACCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCCTTATGCGACGCTTGAGCGTCGCATCCAACAATGACAAGCGGCAGAGAAGATCTCCACCGCTT                                                                                <  1:46467/100‑1                         ACCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCCTGATGCGACGCTTGAGCGTCGCATCCAACAATGACAAGCGGCAGAGAAGATCTCCACCGCTT                                                                                <  2:622263/100‑1                          CCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCCTGATGCGACGCTTGAGCGTCGCATCCAACAATGACAAGCGGCAGAGAAGATCTCCACCGCTTG                                                                               <  1:2524482/100‑1                          CCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCCTGATGCGACGCTTGAGCGTCGCATCCAACAATGACAAGCGGCAGAGAAGATCTCCACCGCTTG                                                                               <  2:2060502/100‑1                            GCTGTATGAAATCAAAAAGTAAGCTGCTTTATGCCTGATGCGACGCTTGAGCGTCGCATCCAACAATGACAAGCGGCAGAGAAGATCTCCACCGCTTG                                                                               <  2:180574/98‑1                               GTATGAAATCAAAAAGTAATCTGCTTTATGCCTGATGCGACGCTTGAGCGTCGCATCCAACAATGACAAGCGGCATAGAAGATCTCCACCGCTTGT                                                                              <  2:1025702/96‑1                               GTATGAAATCAAAAAGTAATCTGCTTTATGCCTGATGCGACGCTTGAGCGTCGCATCCAACAATGACAAGCGGCAGAGAAGATCTCCACCGCTTGTCATT                                                                          <  2:1444077/100‑1                                 ATGAAATCAAAAAGTAATCTGCTTTATGCCTGATGCGACGCTTGAGCGTCGCATCCAACAATGACAAGCGGCAGAGAAGATCTCCACCGCTTGTCATTGT                                                                        <  1:570437/100‑1                                  TGAAATCAAAAAGTAATCTGCTTTATGCCTGATGCGACGCTTGAGCGTCGCATCCAACAATGACAAGCGGCAGAGAAGATCTCCACCGCTTGTCATTGTT                                                                       <  2:998129/100‑1                                                                                                  AAGCGGCAGAGAAGATCTCCACCGCTTGTCATTGTTGGATGCGACGCTCAAGCGTCGCATCAGGCATAAAGCAGATTACTTTTTGATTTCATACAGCGGT       <  1:100659/100‑1                                                                                                     CGGCAGAGAAGATCTCCACCGCTTGTCATTGTTGGATGCGACGCTCAAGCGTCGCATCAGGCATAAAGCAGATTACTTTTTGATTTCATACAGCGGTGTT    >  1:2701999/1‑100                                                                                                     CGGCAGAGAAGATCTCCACCGCTTGTCATTGTTGGATGCGACGCTCAAGCGTCGCATCAGGCATAAAGCAGATTACTTTTTGATTTCATACAGCGGTGTT    <  2:1088112/100‑1                                                                                                     CGGCAGAGAAGATCTCCACCGCTTGTCATTGTTGGATGCGACGCTCAAGCGTCGCATCAGGCATAAAGCAGATTACTTTTTGATTTCATACAGCGGTGTT    <  1:1877610/100‑1                                                                                                      GGCAGAGAAGATCTCCACCGCTTGTCATTGTTGGATGCGACGCTCAAGCGTCGCATCAGGCATAAAGCAGATTACTTTTTGATTTCATACAGCGGTGTTT   >  1:987927/1‑100                                                                                                      GGCAGAGAAGATCTCCACCGCTTGTCATTGTTGGATGCGACGCTCAAGCGTCGCATCAGGCATAAAGCAGATTACTTTTTGATTTCATACAGCGGTGTTT   >  1:1739916/1‑100                                                                                                      GGCAGAGAAGATCTCCACCGCTTGTCATTGTTGGATGCGACGCTCAAGCATCACATCAGGCATAAAGCAGATTACTTTTTGATTTCATAAAACGGTGTTT   >  1:743490/1‑100                                                                                                       GCAGAGAAGATCTCCACCGCTTGTCATTGTTGGATGCGACGCTCAAGCGTCGCATCAGGCATAAAGCAGATTACTTTTTGATTTCATACAGCGGTGTTTG  <  1:2690600/100‑1                                                                                                       GCAGAGAAGATCTCCACCGCTTGTCATTGTTGGATGCGACGCTCAAGCGTCGCATCAGGCATAAAGCAGATTACTTTTTGATTTCATACAGCGGTGTTTG  <  1:2461363/100‑1                                                                                                                                                                                                            GGGCCATATTGTGGCGGGTCAAACACCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCCTGATGCGACGCTTGAGCGTCGCATCCAACAATGACaagcgg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/705842‑705938 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAGCGGCAGAGAAGATCTCCACCGCTTGTCATTGTTGGATGCGACGCTCAAGCGTCGCATCAGGCATAAAGCAGATTACTTTTTGATTTCATACAGCGGTGTTTG  <  NC_000913/705965‑705861

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.