New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1508794	NA (NA)	8 (0.080)	5/166	NT	NA	noncoding (4/33 nt)	REP117 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP117 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	= 1508823	NA (NA)					noncoding (33/33 nt)	REP117 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP117 (repetitive extragenic palindromic) element; contains 1 REP sequences

TAAGTCCGGATGAGCTGCTGAAAACATTGCCGAAGCGAAAAGGGTAAAACGCCAGTTTTCTGGTTACTCACAACTTATTGAATCTGCATGATATTGCCTgccgg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1508696‑1508794 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGCCGGATGCGGCGTAACGCCTTACCCGGCAGGCAATATCATGCAGATTCAATAAGTTGTGAGTAACCAGAAAACTGGCGTTTTACCCTTTTCGCTTCGGCAATG  <  NC_000913/1508823‑1508720                                                                                                                                                                                                             TAAGTCCGGATGAGCTGCTGAAAACATTGCCGAAGCGAAAAGGGTAAAACGCCAGTTTTCTGGTTACTCACAACTTATTGAATCTGCATGATATTGCCTG                                                                                                         >  2:2549400/1‑100    GTCCGGATGAGCTGCTGAAAACATTGCCGAAGCGAAAAGGGTAAAACGCCAGTTTTCTGGTTACTCACAACTTATTGAATCTGCATGATATTGCCTGCCG                                                                                                      >  1:1877604/1‑100    GTCCGGATGAGCTGCTGAAAACATTGCCGAAGCGAAAAGGGTAAAACGCCAGTTTTCTGGTTACTCACAACTTATTGAATCTGCATGATATTGCCTGCCG                                                                                                      >  2:2626491/1‑100    GTCCGGATGAGCTGCTGAAAACATTGCCGAAGCGAAAAGGGTAAAACGCCAGTTTTCTGGTTACTCACAACTTATTGAATCTGCATGATATTGCCTGCCG                                                                                                      <  1:2761688/100‑1     TCCGGATGAGGTGCTGAAATCATTGCCGAAGCGAAAAAGGTAAAACGCCAGTTTTCTGGTTACTCACAACTTATTGAATCTGAATGATATTGCCTGCAGG                                                                                                     <  2:2884382/100‑1     TCCGGATGAGCTGCTGAAAACATTGCCGAAGCGAAAAGGGTAAAACGCCAGTTTTCTGGTTACTCACAACTTATTGAATCTGCATGATATTGCCTGCCGG                                                                                                     <  2:1776694/100‑1        GGATGAGCTGCTGAAAACATTGCCGAATCGAAAAGGGTAAAACGCCAGTTTTCTGGTTACTCACAACTTATTGAATCTGCATGATATTGCCTGCCGG                                                                                                     <  1:159716/97‑1                              CCGAAGCGAAAAGGGTAAAACGCCAGTTTTCTGGTTACTCACAACTTATTGAATCTGCATGATATTGCCTGCCGGATGCGGCGTAACGCCTTACCCGGCA                                                                            <  2:697248/100‑1                               CGAAGCGAAAAGGGTAAAACGCCAGTTTTCTGGTTACTCACAACTTATTGAATCTGCATGATATTGCCTGCCGGATGCGGCGTAACGCCTTAGCCGGCAG                                                                           <  1:1583529/100‑1                               CGAAGCGAAAAGGGTAAAACGCCAGTTTTCTGGTTACTCACAACTTATTGAATCTGCATGATATTGCCTGCCGGATGCGGCGTAACGCCTTACCCGGCAG                                                                           <  2:2396022/100‑1                                GAAGCGAAAAGGGTAAAACGCCAGTTTTCTGGTTACTCACAACTTATTGAATCTGCATGATATTGCCTGCCGGATGCGGCGTAACGCCTTACCCGGCAGG                                                                          <  1:2540632/100‑1                                GAAGCGAAAAGGGTAAAACGCCAGTTTTCTGGTTACTCACAACTTATTGAATCTGCATGATATTGCCTGCCGGATGCGGCGTAACGCCTTACCCGGCAGG                                                                          <  2:452066/100‑1                                GAAGCGAAAAGGGTAAAACGCCAGTTTTCTGGTTACTCACAACTTATTGAATCTGCATGATATTGCCTGCCGGATGCGGCGTAACGCCTTACCCGGCAGG                                                                          <  1:1666797/100‑1                                            GTAAAACGCCAGTTTTCTGGTTACTCACAACTTATTGAATCTGCATGATATTGCCTGCCGGATGCGGCGTAACGCCTTACCCGGCAGGCAATATCATGCA                                                              <  1:1184013/100‑1                                                                  ACTCACAACTTATTGAATCTGCATGATATTGCCTGCCGGGTAAGGCGTTACGCCGCATCCGGCAGGCAATATCATGCAGATTCAATAAGTTGTGAGTAAC                                        >  1:93744/1‑100                                                                                             cgatctTGCCGGATGCGGCGTAACGCCTTACCCGTCAGGCAATATCATGCAGATTCAATAAGTTGTGAGTAACCAGAAAACTGGCGTTTTACCCTTTTC              <  1:2302872/93‑1                                                                                                  CTGCCGGGTAAGGCGTTACGCCGCATCCGGCAGGCAATATCATGCAGATTCAATAAGTTGTGAGTAACCAGAAAACTGGCGTTTTACCCTTTTCGCTTC         >  2:1397511/1‑99                                                                                                   TGCCGGATGCGGCGTAACGCCTTACCCGGCAGGCAATATCATGCAGATTCAATAAGTTGTGAGTAACCAGAAAACTGGCGTTTTACCCTTTTCagatcgg       >  2:2302846/1‑93                                                                                                   TGCCGGATGCGGCGTAACGCCTTACCCGGCAGGCAATATCATGCAGATTCAATAAGTTGTAAGTAACCAGAAAACTGGCGTTTTACCCTTTTCGCTTCGG       <  1:655502/100‑1                                                                                                   TGCCGGATGCGGCGTAACGCCTTACACGGCAGGCAATATCATGCAGATTCAATAAGTTGTGAGTAACCAGAAAACTGGCGTTTTACCCTTTTCGCTTCGG       <  1:2281610/100‑1                                                                                                    GCCGGATGCGGCGTAACGCCTTACCCGGCAGGCAATATCATGCAGATTCAATAAGTTGTGAGTAACCAGAAAACTGGCGTTTTACCCTTTTCGCTTCGGC      <  1:2781752/100‑1                                                                                                    GCCGGATGCGGCGTAACGCCTTACCCGGCAGGCAATATCATGCAGATTCAATAAGTTGTGAGTAACCAGAAAACTGGCGTTTTACCCTTTTCGCTTCGGC      >  2:825620/1‑100                                                                                                     CCGGATGCGGCGTAACGCCTTACCCGGCAGGCAATATCATGCAGATTCAATAAGTTGTGAGTAACCAGAAAACTGGCGTTTTACCCTTTTCGCTTCGGCA     >  2:2459122/1‑100                                                                                                       GGATGCGGCGTAACGCCTTACCCGGCAGGCAATATCATGCAGATTCAATAAGTTGTGAGTAACCAGAAAACTGGCGTTTTACCCTTTTCGCTTCGGCAAT   <  1:2497175/100‑1                                                                                                       GGATGCGGCGTAACGCCTTACCCGGCAGGCAATATCATGCAGATTCAATAAGTTGTGAGTAACCAGAAAACTGGCGTTTTACCCTTTTCGCTTCGGCAA    >  1:565477/1‑99                                                                                                        GATGCGGCGTAACGCCTTACCCGGCAGGCAATATCATGCAGATTCAATAAGTTGTGAGTAACCAGAAAACTGGCGTTTTACCCTTTTCGCTTCGGCAATG  <  1:1032533/100‑1                                                                                                                                                                                                             TAAGTCCGGATGAGCTGCTGAAAACATTGCCGAAGCGAAAAGGGTAAAACGCCAGTTTTCTGGTTACTCACAACTTATTGAATCTGCATGATATTGCCTgccgg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1508696‑1508794 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGCCGGATGCGGCGTAACGCCTTACCCGGCAGGCAATATCATGCAGATTCAATAAGTTGTGAGTAACCAGAAAACTGGCGTTTTACCCTTTTCGCTTCGGCAATG  <  NC_000913/1508823‑1508720

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.