New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1929923 =	NA (NA)	8 (0.080)	6/172	NT	NA	noncoding (1/84 nt)	REP135 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP135 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	1929955 =	NA (NA)					noncoding (33/84 nt)	REP135 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP135 (repetitive extragenic palindromic) element; contains 2 REP sequences

ATAATTCGATTGACTGTTGGCGGATGCGGCGCGAGTGCCTTGTCCGCCCCAGAACGCACCACAATCGTAGGCCTGAGAAGACGCAACAGCGTCGCATCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1930024‑1929923 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCG  >  NC_000913/1929955‑1930053                                                                                                                                                                                                           ATAATTCGATTGACTGTTGGCGGATGCGGCGCGAGTGCCTTGTCCGCCCCAGAACGCACCACAATCGTAGGCCTGAGAAGACGCAACAGCGTCGCATCGG                                                                                                       <  1:2168963/100‑1  TAATTCGATTGACTGTTGGCGGATGCGGCGCGAGTGCCTTGTCCGCCCCAGAACGCACCACAATCGTAGGCCTGAGAAGATGTTACAGCGTCGCATCGGG                                                                                                      <  2:678462/100‑1  TAATTCGATTGACTGTTGGCGGATGCGGCGCGAGTGCCTTGTCCGCCCCAGAACGCACCACAATCGTAGGCCTGAGAAGACGCAACAGCGTCGCATCGGG                                                                                                      <  2:2612825/100‑1   AATTCTATTGACTGTTGACGGATGCGGCGCGAGTGCCTTGTCCGCCCCAGAACGCAAAACAATCGTAGGCCTGAGAAGACGCCATAGAGTCGCATCGGG                                                                                                      >  2:2023304/1‑99   AATTCGATTGACTGTTGGCGGATGCGGCTCGAGTGCCTTGTCCGCCCCAGAACGCACCACAATCGTAGGCCTGAGAAGACGCAACAGCGTCGCATCGGGC                                                                                                     <  1:58111/100‑1   AATTCGATTGACTGTTGGCGGATGCGGCGCGAGTGCCTTGTCCGCCCCAGAACGCACCACAATCGTAGGCCTGAGAAGACGCAACAGCGTCGCATCGGGC                                                                                                     >  2:439020/1‑100   AATTCGATTGACTGTTGGCGGATGCGGCGCGAGTGCCTTGTCCGCCCCAGAACGCACCACAATCGTAGGCCTGAGAAGACGCAACAGCGTCGCATCGGGC                                                                                                     <  2:2254713/100‑1   AATTCGATTGACTGTTGGCGGATGCGGCGCGAGTGCCTTGTCCGCCCCAGAACGCACCACAATCGTAGGCCTGAGAAGACGCAACAGCGTCGCATCGGGC                                                                                                     <  1:2753237/100‑1   AATTCGATTGACTGTTGGCGGATGCGGCGCGAGTGCCTTGTCCGCCCCAGAACGCACCACAATCGTAGGCCTGAGAAGACGCAACAACGTCGCATCGGGC                                                                                                     <  1:2061200/100‑1                                                                ATCGTAGGCCTGAGAAGACGCAACAGCGTCGCATCGGGCCTACGATTGTGGTGCGTTCTGGAGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAA                                        >  1:1225811/1‑100                                                                  CGTAGGCCTGAGAAGACGCAACAGCGTCGCATCGGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAAT                                       >  1:948740/1‑99                                                                  CGTAGGCCTGAGAAGACGCAACAGCGTCGCATCGGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGAGCCGCATCCGCCAACAGTCAATC                                      >  1:2126995/1‑100                                                                    TAGGCCTGAGAAGACGCAACAGCGTCGCATCGGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGA                                    >  1:203696/1‑100                                                                    TAGGCCTGAGAAGACGCAACAGCGTCGCATCGGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGA                                    >  1:1743170/1‑100                                                                      GGCCTGAGAAGACGCAACAGCGTCGCATCGGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACCCGCGCCGCAGCCGCCAACAGTCAATCGAA                                   >  2:1806197/1‑99                                                                       GCCTGAGAAGACGCAACAGCGTCGCATCGGGCCTACGATTGTGGTGCGTTCTGGAGCGGACAAGTCACTCGCGCCGCATCCGCCAACAGTCAATCGAATT                                 >  2:926558/1‑100                                                                             GAAGACGCAACAGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGA                           >  2:1600980/1‑100                                                                                                    GGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTC    >  1:30249/1‑100                                                                                                    GGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTC    >  1:90607/1‑100                                                                                                    GGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTC    >  1:1041735/1‑100                                                                                                      CCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCG  >  1:2810498/1‑100                                                                                                                                                                                                           ATAATTCGATTGACTGTTGGCGGATGCGGCGCGAGTGCCTTGTCCGCCCCAGAACGCACCACAATCGTAGGCCTGAGAAGACGCAACAGCGTCGCATCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1930024‑1929923 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCG  >  NC_000913/1929955‑1930053

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.