New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2219625 =	NA (NA)	6 (0.060)	5/164	NT	NA	noncoding (1/34 nt)	REP152 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP152 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	2219655 =	NA (NA)					noncoding (31/34 nt)	REP152 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP152 (repetitive extragenic palindromic) element; contains 1 REP sequences

CCGCACGCGTTAAGAAAGGCGAGTTTGAGTTGCTGTAATGCTTTAGTAAGGGCGCGACGTTTGCGCCCTTTGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2219729‑2219625 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCTACAAAGGGCGCAAACGTCGCGCCCTTACTAAAGCATTACAGCAACTCAAACTCGCCTTTCTTAACGCGTGCGGAATCAGTGCCGATAAAGACATTGA  >  NC_000913/2219655‑2219753                                                                                                                                                                                                              CCGCACGCGTTAAGAAAGGCGAGTTTGAGTTGCTGTAATGCTTTAGTAAGGGCGCGACGTTTGCGCCCTTTGTAGGCCGGATAAGGCGCTCGCGCCGCAT                                                                                                          >  1:1202788/1‑100  CGCACGCGTTAAGAAAGGCGAGTTTGAGTGGCTGTAATGCTTCAGTAAGGGCGCGACGTTTGCGCCCTTTGTAGGCCGGATAAGGCGCTCGCGCCGCATC                                                                                                         <  2:2127103/100‑1      CGCGTTAAGAAAGGCGAGTTTGAGTTGCTGTAATGCTTTAGTAAGGGCGCGACGTTTGCGCCCTTTGTAGGCCGGATGCGGCGCGAGCGCCTTATCCGGC                                                                                                     <  2:295550/100‑1                                                                  CCCTTTGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCCTACAAAGGGCGCAAACGTCGCGCCCTTACTAAAGCATTACAGCAACTCAAACTCGCCTT                                         >  1:90972/1‑100                                                                          AGGCCGGATAAGGCGCTCGCGCCGCATCCGGCCTACAAAGGGCGCAAACGTCGCGCCCTTACTAAAGCATTACAGCAACTCAAACTCGCCTTTCTTAACG                                 >  2:3020403/1‑100                                                                             CCGGATAAGGCGCTCGCGCCTTATCCGGCCTACAAAGGGCGCAAACGTCGCGCCCTTACTAAAGCATTACAGCAACTCAAACTCGCCTTTCTTAACGCGT                              >  1:1105970/1‑100                                                                             CCGGATAAGGCGCTCGCGCCGCATCCGGCCTACAAAGGGCGCAAACGTCGCGCCCTTACTAAAGCATTACAGCAACTCAAACTCGCCTTTCTTAACGCGT                              >  1:589931/1‑100                                                                               GGATAAGGCGCTCGCGCCGCATCCGGCCTACAAAGGGCGCAAACGTCGCGCCCTTACTAAAGCATTACAGCAACTCAAACTCGCCTTTCTTAACGCGTGC                            >  1:2629658/1‑100                                                                               GGATAAGGCGCTCGCGCCGCATCCGGCCTACAAAGGGCGCAAACGTCGCGCCCTTACTAAAGCATTACAGCAACTCAAACTCGCCTTTCTTAACGCGTGC                            >  1:964084/1‑100                                                                                                   ATCCGGCCTACAAAGGGCGCAAACGTCGCGCCCTTACTAAAGCATTACAGCAACTCAAACTCGCCTTTCTTAACGCGTGCGGAATCAGTGCCGATAAAGA        >  1:29187/1‑100                                                                                                     CCGGCCTACAAAGGGCGCAAACGTCGCGCCCTTACTAAAGCATTACAGCAACTCAAACTCGCCTTTCTTAACGCGTGCGGAATCAGTGCCGATAAAGACA      >  1:445792/1‑100                                                                                                     CCGGCCTACAAAGGGCGCAAACGTCGCGCCCTTACTAAAGCATTACAGCAACTCAAACTCGCCTTTCTTAACGCGTGCGGAATCAGTGCCGATAAAGACA      >  2:1558100/1‑100                                                                                                     CCGGCCTACAAAGGGCGCAAACGTCGCGCCCTTACTAAAGCATTACAGCAACTCAAACTCGCCTTTCTTAACGCGTGCGGAATCAGTGCCGATAAAGACA      >  2:764316/1‑100                                                                                                       GGCCTACAAAGGGCGCAAACGTCGCGCCCTTACTAAAGCATTACAGCAACTCAAACTCGCCTTTCTTAACGCGTGCGGAATCAGTGCCGATAAAGACATT    <  2:150764/100‑1                                                                                                       GGCCTACAAAGGGCGCAAACGTCGCGCCCTTACTAAAGCATTACAGCAACTCAAACTCGCCTTTCTTAACGCGTGCGGAATCAGTGCCGATAAAGACATT    <  1:1973751/100‑1                                                                                                       GGCCTACAAAGGGCGCAAACGTCGCGCCCTTACTAAAGCATTACAGCAACTCAAACTCGCCTTTCTTAACGCGTGCGGAATCAGTGCCGATAAAGACATT    >  1:1951301/1‑100                                                                                                       GGCCTACAAAGGGCGCAAACGTCGCGCCCTTACTAAAGCATTACAGCAACTCAAACTCGCCTTTCTTAACGCGTGCGGAATCAGTGCCGATAAAGACATT    <  1:1506841/100‑1                                                                                                       GGCCTACAAAGGGCGCAAACGTCGCGCCCTTACTAAAGCATTACAGCAACTCAAACTCGCCTCTCTTAACGCGTGCGGAATCAGTGCCGATAAAGACATT    <  2:1620202/100‑1                                                                                                         CCTACAAAGGGCGCAAACGTCGCGCCCTTACTAAAGCATTACAGCAACTCAAACTCGCCTTTCTTAACGCGTGCGGAATCAGTGCCGATAAAGACATTGA  >  1:2972336/1‑100                                                                                                                                                                                                              CCGCACGCGTTAAGAAAGGCGAGTTTGAGTTGCTGTAATGCTTTAGTAAGGGCGCGACGTTTGCGCCCTTTGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2219729‑2219625 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCTACAAAGGGCGCAAACGTCGCGCCCTTACTAAAGCATTACAGCAACTCAAACTCGCCTTTCTTAACGCGTGCGGAATCAGTGCCGATAAAGACATTGA  >  NC_000913/2219655‑2219753

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.