New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	19879 =	NA (NA)	9 (0.090)	5/172	NT	NA	noncoding (685/768 nt)	IS1	repeat region
	?	NC_000913	19905 =	NA (NA)					noncoding (659/768 nt)	IS1	repeat region

AAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCG  >  NC_000913/19780‑19894                                                                                                    |                aaGAGTAGGAATTGCTGGGAATGACTCCAACTTATTGATAGCGTTTTATGTTCAGATAATGGCCGATGACTGTGTCATGCAGCTCCACCGATTTTGAGaa                 >  2:1649345/1‑100 (MQ=14)  agagTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGaa                 >  1:1445718/1‑99 (MQ=255)    agtagtAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACg               <  1:2184679/99‑1 (MQ=255)     gtagtaATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGAc             >  2:1210546/1‑100 (MQ=255)      tagtaATTGCTGGTAATGTCTCCAACTTATTGATATTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCTGTTCCTCCGATTTTGAGAACGACa            <  2:2641746/100‑1 (MQ=14)      tagtaATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACa            <  1:2638692/100‑1 (MQ=255)       agtaATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAg           >  1:2786812/1‑100 (MQ=40)       agtaATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAg           >  1:2219465/1‑100 (MQ=40)        gtaATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGc          >  1:1035650/1‑100 (MQ=40)         taATTGCTGGTTATGACTCCAACTTATTGATAGTGTTTTATGTTTAGATAATGCGCGATGACTTTGTCATGGAGCTGCTTTGATTTTGAGAAGGAGAGCg         <  2:2415531/100‑1 (MQ=14)         taATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCg         >  1:2346883/1‑100 (MQ=38)          aaTTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGa        >  1:2970342/1‑100 (MQ=38)          aaTTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTAATACAGCTCCACCGATTTTGAGAACGACAGCGa        >  1:2354226/1‑100 (MQ=255)           aTTGCTGGTAATGACTCCAAATTATTGATAGTGTTTTATGTTCAGATCATGCACGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAg           <  2:2578261/96‑1 (MQ=255)             tGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACtt     <  2:1330517/100‑1 (MQ=33)              gCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCTTGCAGCTCCACCGATTTTGAGAACGACAGCGACTTc    >  2:2600808/1‑100 (MQ=17)              gCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTc    <  2:2963874/100‑1 (MQ=32)               cTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTcc   >  2:2992142/1‑100 (MQ=31)                tGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCg  <  2:2514779/100‑1 (MQ=11)                                                                                                    |                AAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCG  >  NC_000913/19780‑19894

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.