New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 247464 =NA (NA)7 (0.070) 4/168 NT NA noncoding (7/84 nt) REP18 (repetitive extragenic palindromic) element; contains 2 REP sequences REP18 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 247490 = NA (NA)noncoding (33/84 nt) REP18 (repetitive extragenic palindromic) element; contains 2 REP sequences REP18 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 133 total aligned reads displayed.

CGGCGAAACCATTCGGATAAGCCGATTAGCCGAACCTTTCTGGCAGGACCATTTTTTGGGCGCGCGCAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACGAGCCCGCGAATATTTGCGAGC  >  NC_000913/247365‑247563
                                                                                                   |                                                                                                   
gaggttgttttatatcgggaaagcggctcgcaaatattcgcgggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcgtacaactgcc                                                                                                     >  1:1710123‑M1/100‑100 (MQ=255)
gaggttgttttatatcgggaaagcggctcgcaaatattcgcgggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcgtacaactgcc                                                                                                     >  1:836273‑M1/100‑100 (MQ=255)
cGGCGAAACCATTCGGATAAGCCGATTAGCCGAACCTTTCTGGCAGGACCATTTTTTGGGCGCGCGCAGGATTTTGACGGAAGAGACGATTTTGTAGGAc                                                                                                     <  1:1169379/100‑1 (MQ=255)
 ggCGAAACCATTCGGATAAGCCGATTAGCCGAACCTTTCTGGCAGGACCATTTTTTGGGCGCGCGCAGGATTTTGACGGAAGAGACGATTTTGTAGGACg                                                                                                    >  1:1791886/1‑100 (MQ=255)
 aggttgttttatatcgggaaagcggctcgcaaatattcgcgggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcgtacaactgcCg                                                                                                    <  1:2795764‑M1/2‑1 (MQ=255)
 aggttgttttatatcgggaaagcggctcgcaaatattcgcgggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcgtacaactgcCg                                                                                                    >  1:467554‑M1/99‑100 (MQ=255)
  gagAAACCATTCGGATAAGCCGATTAGCCGAACCTTTCTGGCAGGACCATTTTTTGGGCGCGCGCAGGATTTTGACGGAAGAGACGATTTTGTAGGACgg                                                                                                   >  1:2043205/3‑100 (MQ=255)
   gttgttttatatcgggaaagcggctcgcaaatattcgcgggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcgtacaactgcCGGa                                                                                                  >  1:2670451‑M1/97‑100 (MQ=255)
     aaaCCATTCGGATAAGCCGATTAGCCGAACCTTTCTGGCAGGACCATTTTTTTGGCGTGCGCAGGATTTTGACAGAAGAGACGATTTTGTAGGACGGAt                                                                                                 >  2:960198/1‑99 (MQ=255)
      aaCCATTCGGATAAGCCGATTAGCCGAACCTTTCTGGCAGGACCATTTTTTGGGCGCGCGCAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATaa                                                                                               >  1:2148333/1‑100 (MQ=255)
        ccATTCGGATAAGCCGATTAGGCGAACCTTTCTGGCAGGACCATTTTTTGGGCGCGCGCAGGATTTTGACTGAATAGACGAGTTTGTAGGACGGATAAgg                                                                                             <  2:204976/100‑1 (MQ=255)
        ccATTCGGATAAGCCGAGTAGCCGAACCTTTCTGGCAGGGCCATTTTTTGGGCGCGCGCAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATa                                                                                                <  2:336920/97‑1 (MQ=255)
         cATTCGGATAAGCCGATTAGCCGAACATTTCTGGAAGGACCATTTTTTGGGCGCGCGCAGGCTTTTCACGGAAGAGCCGATTTTGTAGGACGGCTa                                                                                                >  2:2879894/1‑96 (MQ=255)
          tatatcgggaaagcggctcgcaaatattcgcgggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcgtacaactgcACGATAGGGc                                                                                            <  2:2779865‑M1/10‑1 (MQ=255)
           ttCGGATAAGCCGATTAGCCGAACCTTTCTGGCAGGACCATTTTTTGGGCGCGCGCAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGt                                                                                          >  1:2245177/1‑100 (MQ=255)
                 tAAGCCGATTAGCCGAACCTTTCTGGCAGGACCATTTTTTGGGCGCGCGCAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTAcgc                                                                                    <  2:2475259/100‑1 (MQ=255)
                  aaGCCTATTAGCCGAACCTTTCTGGCAGGACCATTTTTTGGGCGCGCGCAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTAcgcc                                                                                   <  1:2042124/100‑1 (MQ=255)
                  aaGCCGATTAGCCGAACCTTTCTGGCAGGACCATTTTTTGGGCGTGCGTAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTAcgcc                                                                                   <  1:832626/100‑1 (MQ=255)
                   aGCCGATTAGCCGAACCTTTCTGGCAGGACCATTTTTTTGGCGCGCGCAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTAcgccg                                                                                  >  2:401280/1‑100 (MQ=255)
                   aGCCGATTAGCCGAACCTTTCTGGCAGGACCATTTTTTGGGCGCGCGCAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTAcgccg                                                                                  >  2:2429349/1‑100 (MQ=255)
                   aGCCGATTAGCCGAACCTTTCTGGCAGGACCATTTTTTGGGCGCGCGCAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTAcgccg                                                                                  >  1:257076/1‑100 (MQ=255)
                   aGCCGATTAGCCGAACCTTTCTGGCAGGACCATTTTTTGGGCGCGCGCAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTAcgccg                                                                                  <  1:1056633/100‑1 (MQ=255)
                    gCCGATTAGCCGAACCTTTCTGGCAGGACCATTTTTTGGGCGCGCGCAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTAcgccgc                                                                                 >  1:2025986/1‑100 (MQ=255)
                         ttAGCCGAACCTTTCTGGCAGGACCATTTTTTGGGCGCGCGTAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCg                                                                            <  1:899060/100‑1 (MQ=255)
                          tAGCCGAACCTTTCTGGCAGGACCATTTTTTGGGCGCGCGCAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCgg                                                                           <  2:1445300/100‑1 (MQ=255)
                          tAGCCGAACCTTTCTGGCAGGACCATTTTTTGGGCGCGCGCAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCgg                                                                           >  1:1975340/1‑100 (MQ=255)
                           tcgcaaatattcgcgggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcgtacaactgcCGGATAAGGCGTTTACGCCGCATCCGGc                                                                          >  1:2145140‑M1/73‑100 (MQ=255)
                           tcgcaaatattcgcgggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcgtacaactgcCGGATAAGGCGTTTACGCCGCATCCGGc                                                                          >  1:1119785‑M1/73‑100 (MQ=255)
                           aGCCGAACCTTTCTGGCAGGACCATTTTTTGGGCGTGCGCAGGATTTTGACGGAAGAGACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc                                                                          >  2:379689/1‑100 (MQ=255)
                           aGCCGAACCTTTCTGGCAGGACCATTTTTTGGGCGCGCGCAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGc                                                                          <  1:1666254/100‑1 (MQ=255)
                           aGCCGAACCTTTCTGGCAGGACCATTTTTTGGGCGCGCGCAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGc                                                                          >  1:2825516/1‑100 (MQ=255)
                           aGCCGAACCTTTCTGGCAGGACCATTTTTTGGGCGCGCGCAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGc                                                                          >  1:1368371/1‑100 (MQ=255)
                            gCCGAACCTTTCTGGCAGGACCATTTTTTGGGCGCGCGCAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCa                                                                         >  2:2509216/1‑100 (MQ=255)
                             gcaaatattcgcgtgctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcgtacaactgcCGGATAAGGCGTTTACGCCGCATCCGGCa                                                                         >  1:421081‑M1/71‑99 (MQ=255)
                              caaatattcgcgggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcgtacaactgcCGGATAAGGCGTTTACGCCGCATCCGGCAGt                                                                       >  1:1541802‑M1/70‑100 (MQ=255)
                              caaatattcgcgggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcgtacaactgaCGGATAAGGCGTTTACGCCGCATCCGGCAGt                                                                       >  1:737064‑M1/70‑100 (MQ=255)
                              cGAACCTTTCTGGCAGGACCATTTTTTTTTTTTTTTTAGGATTTTGACGGGAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGt                                                                       >  2:2125956/1‑100 (MQ=18)
                              cGAACCTTTCTGGCAGGACCATTTTTTGGGCGCGCGCAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGt                                                                       >  1:1867642/1‑100 (MQ=255)
                               gAACCTTTCTGGTATTACCATTTTTTGGGCGTGCGCAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATGCGGCGTAAACGCCTTATCCgtcctac                                                                      <  1:1784034/100‑7 (MQ=16)
                               gAACCTTTCTGGCAGGACCATTTTTTTGTCTTGCGCAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGtt                                                                      >  2:1231951/1‑100 (MQ=37)
                                   attcgcgggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcgtacaactgaCGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTAc                                                                  >  2:966209‑M1/65‑100 (MQ=255)
                                      tCTGGCAGGACCATTTTTTGGGCGCGCGCAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCa                                                               <  2:1960855/100‑1 (MQ=255)
                                        tGGCAGGACCATTTTTTGGGCGCGCGCAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAgg                                                             >  1:1977505/1‑100 (MQ=255)
                                         ggCAGGACCATTTTTTGGGCGCGCGCAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGt                                                            >  1:3020543/1‑100 (MQ=255)
                                         ggCAGGACCATTTTTTGGGCGCGCGCAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGt                                                            >  1:2415251/1‑100 (MQ=255)
                                             ggACCATTTTTTGGGCGCGCGCAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCt                                                        >  1:121653/1‑100 (MQ=255)
                                               aCCATTTTTTGGGCGCGCGCAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGa                                                      >  2:669203/1‑100 (MQ=255)
                                               aCCATTTTTTGGGCGCGCGCAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGa                                                      <  1:1466187/100‑1 (MQ=255)
                                                ccATTTTTTGTGCGTGCGCAGGATATTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTTCCTGAt                                                     >  2:1693606/1‑100 (MQ=37)
                                                ccATTTTTTGGGCGCGCGCAGGATTTTTACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGAt                                                     <  2:655428/100‑1 (MQ=255)
                                                ccATTTTTTGGGCGCGCGCAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGAt                                                     >  1:1777890/1‑100 (MQ=255)
                                                ccATTTTTTGGGCGCGCGCAGGATTTTAACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGAt                                                     >  2:3015003/1‑100 (MQ=255)
                                                accatttttGGGCGCGCGCAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGAt                                                     >  1:1363259/5‑100 (MQ=255)
                                                 cATTTTTTGGGCGCGCGCAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGATg                                                    >  2:2149888/1‑100 (MQ=255)
                                                   ttttttGGGCGCGCGCAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGATGc                                                   >  2:2837496/1‑99 (MQ=255)
                                                   ttttttGGGCGCGCGCAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGATGCg                                                  <  2:1640393/100‑1 (MQ=255)
                                                     ttttGGGCGCGCGCAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGATGCGAc                                                >  1:2436708/1‑100 (MQ=255)
                                                          ggCGCGCGCAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGATGCGACGCTgg                                           >  1:1368723/1‑100 (MQ=255)
                                                          ggCGCGCGCAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGATGCGACGCTgg                                           <  1:338275/100‑1 (MQ=255)
                                                           gcgcgcgcAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAAGTGCCTGATGCGACGCTGgc                                          >  2:1169231/1‑100 (MQ=255)
                                                              cgcgcAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGATGCGACGCTGGcgcg                                       <  2:405931/100‑1 (MQ=255)
                                                              cgcgcAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGATGCGACGCTGGcgcg                                       <  1:1621604/100‑1 (MQ=255)
                                                                cgcAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGATGCGACGCTGGCGCGTc                                     >  1:2396211/1‑100 (MQ=255)
                                                                 gcAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGATGCGACGCTGGCGCGTCt                                    <  2:1552132/100‑1 (MQ=255)
                                                                  cAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGATGCGACGCTGGCGCGTCtt                                   >  1:1692690/1‑100 (MQ=255)
                                                                  cAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGATGCGACGCTGGCGCGTCtt                                   <  2:770745/100‑1 (MQ=255)
                                                                   aGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGATGCGACGCTGGCGCGTCTTa                                  <  2:1415749/100‑1 (MQ=255)
                                                                    tgATTGTGACGGAAGAGACGATTTTGAAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGATGCGACGCTGGCGCGTCt                                    <  2:1814037/96‑1 (MQ=255)
                                                                    ggATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGATGCGACGCTGGCGCGTCTTAt                                 >  2:520386/1‑100 (MQ=255)
                                                                    ggATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGATGCGACGCTGGCGCGTCTTAt                                 >  2:277675/1‑100 (MQ=255)
                                                                    ggATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGATGCGACGCTGGCGCGTCTTAt                                 <  2:509996/100‑1 (MQ=255)
                                                                     gATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGATGCGACGCTGGCGCGTCTTATc                                <  2:1534825/100‑1 (MQ=255)
                                                                      aTTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGATGCGACGCTGGCGCGTCTTATCa                               <  1:1616071/100‑1 (MQ=255)
                                                                      aTTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGATGCGACGCTGGCGCGTCTTATCa                               >  1:1893462/1‑100 (MQ=255)
                                                                       ttttGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGATGCGACGCTGGCGCGTCTTATCAt                              <  2:631242/100‑1 (MQ=255)
                                                                        tttGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGATGCGACGCTGGCGCGTCTTATCATg                             <  2:1363247/100‑1 (MQ=255)
                                                                        tttGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGATGCGACGCTGGCGCGTCTTATCATg                             <  1:1496060/100‑1 (MQ=255)
                                                                         ttGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCATAATGCGACGCTGGCGCGTCTTATCATGc                            >  1:742901/1‑100 (MQ=255)
                                                                          tGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGATGCGACGCTGGCGCGTCTTATCATGcc                           <  2:2765426/100‑1 (MQ=255)
                                                                           gACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAAGTGCCTGATGCGACGCTGGCGCGTATTATCATGCCt                          >  1:246056/1‑100 (MQ=255)
                                                                              ggAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACg                       <  1:2831192/100‑1 (MQ=255)
                                                                                aaGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACGAg                     <  1:2269637/100‑1 (MQ=255)
                                                                                    gaCGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACGAGCCcg                 <  1:401283/100‑1 (MQ=255)
                                                                                    gaCGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACGAGCCcg                 >  2:311467/1‑100 (MQ=255)
                                                                                     aCGATTTTGTAGAACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACGAGCCcgc                <  2:1071353/100‑1 (MQ=255)
                                                                                      cGATTTTGTAGGACGGATAAGGCGTTTGCGCCGCAGTCGGCAGTTGTACGCAGGTGCCTGATGCGACGTGGGCGCGTCTTATCATGCCTACGAGCCcgc                <  2:954358/99‑1 (MQ=21)
                                                                                      cGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACGAGCCcgcg               <  2:1867620/100‑1 (MQ=255)
                                                                                      cGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACGAGCCcgcg               <  1:2267832/100‑1 (MQ=255)
                                                                                      cGATTTTGTAGGACGGACAAGGAGATTACCCCGCATCCGGCAGTTGTACGCAAGTGCCTGATGCGCCGCTGGCGCGGCTTATCATGCCTACGAGCCcgcg               >  2:1912649/1‑100 (MQ=21)
                                                                                       gATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACGAGCCCGCGa              <  2:1692670/100‑1 (MQ=255)
                                                                                            tGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACGAGCCCGCGAATAtt         >  1:2112142/1‑100 (MQ=255)
                                                                                               aGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACGAGCCCGCGAATATTTGc      <  2:3030952/100‑1 (MQ=255)
                                                                                               aGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACGAGCCCGCGAATATTTGc      <  2:2003013/100‑1 (MQ=255)
                                                                                               aGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGATGCGACGCTCGCACGTCTTATCATGCCTACAAGCCAGCGAATATTTGc      >  1:1904414/1‑100 (MQ=18)
                                                                                                ggACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACGAGCCCGCGAATATTTGCg     >  1:1926829/1‑100 (MQ=255)
                                                                                                ggACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACGAGCCCGCGAATATTTGCg     <  1:751414/100‑1 (MQ=255)
                                                                                                ggACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACGAGCCCGCGAATATTTGCg     <  1:344525/100‑1 (MQ=255)
                                                                                                  aCGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACGAGCCCGCGAATAtttgaga    <  1:1457168‑M1/98‑4 (MQ=255)
                                                                                                   CGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACGAGCCCGCGAATATTTGCGAGc  <  2:2193173‑M1/100‑1 (MQ=255)
                                                                                                   CGGATAAGGCGTTTACGCCGCATCCCGCAGTTGTACGCAGGTGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACGAGCCCGCGAATATTTGCGAGc  >  2:1389782‑M1/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
CGGCGAAACCATTCGGATAAGCCGATTAGCCGAACCTTTCTGGCAGGACCATTTTTTGGGCGCGCGCAGGATTTTGACGGAAGAGACGATTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCAGTTGTACGCAGGTGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACGAGCCCGCGAATATTTGCGAGC  >  NC_000913/247365‑247563

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.