New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2568139 =NA (NA)10 (0.100) 6/164 NT NA noncoding (1/183 nt) REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences
?NC_000913 3231282 = NA (NA)noncoding (31/283 nt) REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences

Only 100 of 190 total aligned reads displayed.

CCTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCC  >  NC_000913/3231184‑3231381
                                                                                                  |                                                                                                   
ccTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCTTTATCCGCCCt                                                                                                    <  2:1585969/100‑1 (MQ=255)
ccTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCt                                                                                                    <  2:1321774/100‑1 (MQ=255)
  tGGAGTGCCGCGCATTTGTATATGTTGTATAACTATTTTTTCCGTAAGCCATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTAc                                                                                                  >  1:1047062/1‑100 (MQ=255)
       tGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACAtgtg                                                                                             <  2:1146860/100‑1 (MQ=255)
       tGCCGCGCATCTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGTTGGGGCGTAAACGCCTTATCCGCCCTACAtgtg                                                                                             <  2:1991953/100‑1 (MQ=255)
        gCCGCGCATTTGTATATGTTGTATAACGATTTTTTTTGTTATCTATAATTTGCAACTGCTGGCGGATGCGGCGTCAACGCCTTATCCTCCCTACAtgttc                                                                                            >  2:1059035/1‑98 (MQ=25)
        gCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGTAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGc                                                                                            <  1:153324/100‑1 (MQ=255)
        gCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGc                                                                                            >  2:825249/1‑100 (MQ=255)
        gCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGc                                                                                            >  2:1601984/1‑100 (MQ=255)
        gCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGc                                                                                            >  1:917440/1‑100 (MQ=255)
        gCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGc                                                                                            >  1:2007083/1‑100 (MQ=255)
        gCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGc                                                                                            <  1:1483977/100‑1 (MQ=255)
         ccGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCa                                                                                           >  2:2424393/1‑100 (MQ=255)
         ccGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCa                                                                                           >  2:2546283/1‑100 (MQ=255)
         ccGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGACGAATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCa                                                                                           >  1:351780/1‑100 (MQ=255)
          cgcgCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCaa                                                                                          >  2:1483201/1‑100 (MQ=255)
           gcgcATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAAt                                                                                         >  2:181372/1‑100 (MQ=255)
             gcATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAAtcc                                                                                       <  1:1098450/100‑1 (MQ=255)
             gcATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAAtcc                                                                                       <  2:2026785/100‑1 (MQ=255)
               aTTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAATTGTTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAAtcctc                                                                                     <  1:91263/100‑1 (MQ=255)
                tttGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAAtcctcc                                                                                    <  2:49610/100‑1 (MQ=255)
                tttGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAAtcctac                                                                                    <  1:2061908/100‑3 (MQ=255)
                 ttGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATATGCAATcctcct                                                                                   >  1:414705/1‑100 (MQ=255)
                  tGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTg                                                                                  >  1:696441/1‑100 (MQ=255)
                   gTATATGTTGAATAACGATTTTTTCCGTAAGCACTAATTTGCCACTGCTATCGGATGCGGCGTAAACGCCTTATCCCACGTACATGTACAATCCTCCTg                                                                                  >  1:261351/1‑99 (MQ=25)
                    tataTGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGc                                                                                >  1:2217024/1‑100 (MQ=255)
                       atGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCgg                                                                             <  2:797015/100‑1 (MQ=255)
                       atGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCgg                                                                             >  2:2886654/1‑100 (MQ=255)
                       atGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCgg                                                                             <  1:774050/100‑1 (MQ=255)
                        tgttgtATAACGATTTTTTTTTTAATTTATAATTTGCAACTGCTTGCGGATGCGGCGTATACGCCTTATCCGCACTACATGTGCACtactcttcgc                                                                                >  2:1291712/1‑91 (MQ=16)
                        tgttgtATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACTCCCTATCCGCCCTACATGTGCAATccccctctc                                                                                >  2:1211906/1‑93 (MQ=37)
                        tgttgtATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGa                                                                            <  2:2360354/100‑1 (MQ=255)
                        tgttgtATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGa                                                                            <  1:2170980/100‑1 (MQ=255)
                         gttgtATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGAt                                                                           >  1:1604989/1‑100 (MQ=255)
                           tgtATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATaa                                                                         >  1:920713/1‑100 (MQ=255)
                           tgtATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATaa                                                                         <  2:219264/100‑1 (MQ=255)
                           tgtATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATa                                                                          >  2:1070364/1‑99 (MQ=255)
                           tgtATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGACGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATaa                                                                         >  1:40836/1‑100 (MQ=255)
                            gtATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATaaa                                                                        <  1:1832844/100‑1 (MQ=255)
                            gtATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATACTCCTGCCCGGATaaa                                                                        >  2:1233485/1‑100 (MQ=255)
                                aaCGATTTTTTCTGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAAcgc                                                                    <  1:1428821/100‑1 (MQ=255)
                                aaCGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAAcgc                                                                    >  2:2834412/1‑100 (MQ=255)
                                 aCGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAAcgcg                                                                   >  2:1690582/1‑100 (MQ=255)
                                 aCGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGCCCGGATAAAAcgcg                                                                   >  2:2550207/1‑100 (MQ=255)
                                 aCGATTTTTTCCGTAAGCAATAATATGCAAATGCTGGCGGATGCGGCGTAAACGCCTTATCAGCCCTACATGTGCAATACTCCTGCCCGGATAAAAcgc                                                                    >  2:3838/1‑99 (MQ=25)
                                  cGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCgg                                                                  <  1:2434199/100‑1 (MQ=255)
                                    aTTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCa                                                                >  1:2317243/1‑100 (MQ=255)
                                    aTTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCa                                                                >  2:2326319/1‑100 (MQ=255)
                                    aTTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCa                                                                <  2:1362327/100‑1 (MQ=255)
                                    aTTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCa                                                                <  1:94317/100‑1 (MQ=255)
                                     ttttttCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCaa                                                               >  1:1940234/1‑100 (MQ=255)
                                       ttttCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCACTACTCCTTGCCGGATAAACCGCGGCAAGc                                                             >  2:924178/1‑100 (MQ=37)
                                       ttttCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACACCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGc                                                             >  1:807446/1‑100 (MQ=255)
                                         ttCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGt                                                           <  2:684030/100‑1 (MQ=255)
                                           ccGTAAGCAATAATTTGCAACTGATGGAGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTg                                                         >  2:741678/1‑100 (MQ=255)
                                            cGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGACTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGc                                                        <  2:1945714/100‑1 (MQ=255)
                                            cGTAAGAAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTg                                                         <  1:2171969/99‑1 (MQ=255)
                                             gTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTATACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCa                                                       <  1:2424422/100‑1 (MQ=255)
                                              tAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATTCTGCTGGCAGGATAAAACGCGGCAAGCGTCGCAt                                                      >  2:2253693/1‑100 (MQ=18)
                                               aaGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATc                                                     >  1:1961147/1‑100 (MQ=255)
                                               aaGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATc                                                     <  2:2631146/100‑1 (MQ=255)
                                               aaGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATc                                                     >  1:2436800/1‑100 (MQ=255)
                                                aGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATcc                                                    >  1:564102/1‑100 (MQ=255)
                                                   aataatTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGc                                                 <  2:720884/100‑1 (MQ=255)
                                                    ataatTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAATGCGGCAAGCGTTGCATCCGGCa                                                <  1:1372553/100‑1 (MQ=255)
                                                       atTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACt                                             <  1:1975749/100‑1 (MQ=255)
                                                       atTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACt                                             >  1:294055/1‑100 (MQ=255)
                                                        tttGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTg                                            >  1:613301/1‑100 (MQ=255)
                                                        tttGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTg                                            <  1:2555445/100‑1 (MQ=255)
                                                         ttGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGc                                           <  2:1676349/100‑1 (MQ=255)
                                                          tGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCa                                          >  2:303710/1‑100 (MQ=255)
                                                          tGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCa                                          >  2:855725/1‑100 (MQ=255)
                                                           gCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCAc                                         <  2:917434/100‑1 (MQ=255)
                                                                tgctgGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAAATGCACCgcgc                                    >  1:397523/1‑100 (MQ=255)
                                                                    ggCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACt                                >  2:2954374/1‑100 (MQ=255)
                                                                      cggataaggcgtttacgccgcatccgccCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTgg                              >  1:1337806‑M2/29‑100 (MQ=255)
                                                                      cGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTgg                              >  2:108462/1‑100 (MQ=255)
                                                                       ggataaggcgtttacgccgcatccgccCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGc                             >  2:2766623‑M2/28‑100 (MQ=255)
                                                                       ggataaggcgtttacgccgcatccgccCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGc                             >  1:2291639‑M2/28‑100 (MQ=255)
                                                                       ggataaggcgtttacgccgcatccgccCTACATGTGCAATCCTCCTAGCCAGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGc                             >  1:2540987‑M2/28‑100 (MQ=255)
                                                                       ggATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGc                             >  1:673911/1‑100 (MQ=255)
                                                                        gATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCg                            <  1:2571671/100‑1 (MQ=255)
                                                                         gataaggcgtttacgccgcatccgcCAGCAGTTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCgg                           >  1:1128045‑M2/26‑100 (MQ=255)
                                                                            cggcgTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATg                        >  1:2723142/1‑100 (MQ=255)
                                                                              gcgTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATgc                       >  2:1201482/1‑99 (MQ=255)
                                                                                  aaaCGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCAGGCAACTGCACCGCGCCACTGGCGGATgcagcg                   >  1:1297201/1‑99 (MQ=255)
                                                                                  aaaCGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATACGGCAACTGCACCGCGCCACTGGCGGATgcggc                    >  2:1491281/1‑98 (MQ=255)
                                                                                    aCGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGa                <  1:1741353/100‑1 (MQ=255)
                                                                                     cGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGaa               >  1:2521786/1‑100 (MQ=255)
                                                                                      gCCTTATCCGCCCTACATGTGCAATCCTCCTTGCCGAATAAAACTCTGCAAGCTTTGAATCAGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAAc              <  2:1010077/100‑1 (MQ=18)
                                                                                       ccTTATCCGCCCTTCATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACg             <  1:2739492/100‑1 (MQ=255)
                                                                                        cTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGc            >  1:2921611/1‑100 (MQ=255)
                                                                                         ttATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGcc           <  1:1394689/100‑1 (MQ=255)
                                                                                         ttATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGcc           <  1:1568378/100‑1 (MQ=255)
                                                                                         ttATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGcc           <  2:1437197/100‑1 (MQ=255)
                                                                                         ttATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGc            <  1:2779203/99‑1 (MQ=255)
                                                                                          tATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCt          >  2:2213659/1‑100 (MQ=255)
                                                                                          tATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCt          >  1:2829298/1‑100 (MQ=255)
                                                                                          tATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCt          <  1:1054987/100‑1 (MQ=255)
                                                                                                  cTACCTGTGCAATCGTCCTGGCCGGATAGAACGCGGCAAGCGTTGCATCCGGCAACTGCTCCGCGCCACTGGCGGATGCGGCGTGAACGCCTTag       <  2:1898831/95‑2 (MQ=18)
                                                                                                  |                                                                                                   
CCTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCC  >  NC_000913/3231184‑3231381

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.