New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 258586	NA (NA)	28 (0.270)	7/168	NT	NA	noncoding (90/768 nt)	IS1	repeat region
	?	NC_000913	= 279852	NA (NA)					noncoding (79/768 nt)	IS1	repeat region

TAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATGGGCTAATT  >  NC_000913/279836‑279951                 |                                                                                                    tAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCTACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGaa                  <  1:407587/100‑1 (MQ=17) tAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGAAGCATAACAGAGaa                  >  1:2973059/1‑100 (MQ=255)  aGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAac                 <  1:3043299/100‑1 (MQ=33)  aGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAac                 >  2:10831/1‑100 (MQ=33)   gCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAaca                >  2:1188542/1‑100 (MQ=35)    cTGAACAGTAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAacac               >  2:911310/1‑100 (MQ=25)    cTGAACAGGAGGGACAGCTGATAGAAACAGTAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTTGCAGCATCACCGAGAacac               <  2:1148537/100‑1 (MQ=255)      gAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACaa             >  1:1106799/1‑100 (MQ=38)      gAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACaa             >  2:15781/1‑100 (MQ=38)      gAACAGGAGGGACAGCTGATAGAAACAGAAGCAACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACaa             >  2:1875511/1‑100 (MQ=255)       aaCAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCTGTAAGTTGGCAGCATCACCGAGAACACaaa            <  2:963727/100‑1 (MQ=255)       aaCAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACaaa            >  1:2221954/1‑100 (MQ=40)        aCAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAAt           <  1:1188553/100‑1 (MQ=40)         cAGGAGGGACAGCTGATAGAAACAGAAACCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACaaa            >  2:1158293/1‑98 (MQ=255)          aggaggGACAGTTGATAGAAACAGAAGCCACTTGTGCACCTCAAAAACACCATCATACACTAAAGCAGGAAGTTGGCAGCATCACCGAGAACACAAATg          <  1:1398647/99‑1 (MQ=14)            gaggGACAGCTAATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAATTCAGTAAGTTGGCAGCATCAAAGAGAACACAAATGGGc       <  2:2609246/100‑1 (MQ=14)             aggGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATGGGCt      <  1:2488948/100‑1 (MQ=255)               ggACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATGGGCTaa    <  2:1083414/100‑1 (MQ=255)                 aCAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATGGGCTAAtt  <  1:1644595/100‑1 (MQ=255)                 |                                                                                                    TAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATGGGCTAATT  >  NC_000913/279836‑279951

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.