| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 315265 | 71 (0.660) | 11 (0.110) | 6/166 | NT | 20.5% | noncoding (37/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 566835 | 19 (0.190) | noncoding (59/1258 nt) | IS3 | repeat region | |||||
GTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCT > NC_000913/566736‑566918 | gtgCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTg < 1:1641528/100‑1 (MQ=255)gtgCACAGGACGTTGCCGCGGCAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGAAAACTGGCAGTCAGAGGTg > 2:1459493/1‑100 (MQ=21) gCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAAGAGTGGAGACGCGGCTAAGTGAGTAAACTCTCAGGCAGAGGTGac < 2:2365524‑M2/100‑3 (MQ=255) cacaGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGact < 2:1635625‑M2/100‑4 (MQ=255) cacaGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGact > 1:2372670‑M2/1‑97 (MQ=255) acaGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGactc > 1:1406493‑M2/1‑96 (MQ=255) acaGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGactc < 1:1742357‑M2/100‑5 (MQ=255) acaGGACGTTGCCGCGGTAACAGGCGCAAACGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTATCAGTCAGAGGTAact < 2:242462‑M2/99‑4 (MQ=255) acaGGACGTTGCCGCGGTAACAGACGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGactc < 2:487994‑M2/100‑5 (MQ=255) caGGACGTTGCCGCGGTAACAAGCGCAACCGTAATCTGATATTACAGAGAAATAGTGGACACGCGGGTAAGTGAGTAAAATCTCAGTCAGAGGTGACTca > 2:1706824/1‑100 (MQ=18) agtaCGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcac < 1:1523128/97‑1 (MQ=255) ggACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcaca < 2:1465593/100‑1 (MQ=255) ggACGTTGCCGCGGTAACAGGCGCAACCGTAAGCTGATCTTACCGAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcaca < 2:2414468/100‑1 (MQ=255) cttccgatctgcgGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGTGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcaca < 2:2082995/90‑1 (MQ=17) gACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt < 1:667260/100‑1 (MQ=255) aCGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATg < 2:979748/100‑1 (MQ=255) cGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTcacttag < 2:1096243/100‑5 (MQ=18) gTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc < 2:1536145/100‑1 (MQ=255) gTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc < 1:530209/100‑1 (MQ=255) ttGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAcn < 2:1566705/100‑2 (MQ=255) ttccGCGGTAATAGGCGTAACCGTAATCTGATCTTTCCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTcacttagccg < 1:729490/98‑8 (MQ=9) gCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACan < 2:1506275/99‑2 (MQ=255) gCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaaa > 1:508024/1‑100 (MQ=255) ccGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaaaa > 2:425038/1‑100 (MQ=255) gcgGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGTGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAAGatcggaag > 1:2083018/1‑93 (MQ=17) tAACAGGCGCATCTGTTATTTGATCTTATCTAGTAATAGTGGACACGCGGCTAAGTGAGGAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAg < 1:460505/98‑1 (MQ=11) cAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCa > 1:1735024/1‑100 (MQ=255) agtctcAACCTTAATCTGATCTTACCCAGCAATAGTTGACACTCTGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCa < 1:124966/94‑1 (MQ=11) ggCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAAc > 2:2270177/1‑100 (MQ=40) ggCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAAc > 1:1755348/1‑100 (MQ=40) gcgcAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAAcc < 1:1586148/100‑1 (MQ=38) gcgcAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAAcc < 2:2156865/100‑1 (MQ=38) gcgcAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAAcc < 2:1631067/100‑1 (MQ=38) gcgcAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGAGACTCACATGACAAAAACAGTATCAAcc > 2:2984833/1‑100 (MQ=255) gcAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAg < 1:624768/100‑1 (MQ=35) cAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGt < 2:1756637/100‑1 (MQ=35) aaCCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTa < 1:1890240/100‑1 (MQ=33) aCCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTaa < 1:425041/100‑1 (MQ=32) ccGTAATCTGATCTTATCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAATACAGTATCAACCAGTaaa < 2:1773170/100‑1 (MQ=9) cGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTaaaa > 1:1426634/1‑100 (MQ=11) cGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACACTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTaaaa > 1:599631/1‑100 (MQ=11) cgGCTAAGTGAGTAAACTCTCAGTCAGAGGTGactcacttagccgcgtgtccactattgctgggtaagaggcactggcgtataggtcacctcggcagaaa < 1:1473516‑M2/100‑69 (MQ=255) cgGCTAAGTGAGTAAACTCTCAGTCAGAGGTGactcacttagccgcgtgtccactattgctgggtaagaggcactggcgtataggtcacctcggcagaaa < 2:2716361‑M2/100‑69 (MQ=255) ggCTAAGTGAGTAAACTCTCAGTCAGAGGTGactcacttagccgcgtgtccactattgctgggtaagaggcactggcgtataggtcacctcggcagaaat < 1:311668‑M2/100‑70 (MQ=255) gCTAAGTGAGTAAACTCTCAGTCAGAGGTGactcacttagccgcgtgtccactattgctgggtaagaggcactggcgtataggtcacctcggcagaaata < 1:2179910‑M2/100‑71 (MQ=255) gCTAAGTGAGTAAACTCTCAGTCAGAGGTGactcacttagccgcgtgtccactattgctgggtaagaggcactggcgtataggtcacctcggcagaaata < 1:1796589‑M2/100‑71 (MQ=255) cTAAGTGAGTAAACTCTCAGTCAGAGGTGactcacttagccgcgtgtccactattgctgggtaagaggcactggcgtataggtcacctcggcagaaatag < 2:1142003‑M2/100‑72 (MQ=255) cTAAGTGAGTAAACTCTCAGTCAGAGGTGactcacttagccgcgtgtccactattgctgggtaagaggcactggcgaataggtcacctcggcagaaata < 1:1735459‑M2/99‑71 (MQ=255) cTAAGTGAGTAAACTCTCAGTCAGAGGTGactcacttagccgcgtgtccactattgctgggtaaaagacactggcgtataggtcacctcggcagaaatag < 1:1782949‑M2/100‑72 (MQ=255) cTAAGTGAGTAAACTCTCAGTCAGAGGTGactcacttagccgcgtgtccactattaataggtaagagacactggcgtataggtcacctcggcagaaata < 1:960530‑M2/99‑71 (MQ=255) tAAGTGAGTAAACTCTCAGTCAGAGGTGactcacttagccgcgtgtccactattgctgggtaagaggcactggcgtataggtcacctcggcagaaatagc < 1:236363‑M2/100‑73 (MQ=255) aCTCTCAGTCAGAGGTGactcacttagccgcgtgtccactattgctgggtaagaggcactggcgtataggtcacctcggcagaaatagcatgcgggtctt < 1:2877061‑M2/100‑84 (MQ=255) | GTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCT > NC_000913/566736‑566918 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |