New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	381292 =	NA (NA)	23 (0.240)	21/160	NT	NA	noncoding (33/1331 nt)	IS2	repeat region
	?	NC_000913	381312 =	NA (NA)					noncoding (53/1331 nt)	IS2	repeat region

CCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATT  >  NC_000913/381217‑381356                                                                                                |                                             ccATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCtt                                          <  2:1699692/100‑1 (MQ=255)  cATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGCCTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTcgt                                          <  2:2847708/99‑3 (MQ=255)    ttGCTGATTATTGTGCCAGGACTAATAAACGCATAATTACTAGATTGGCCTCCTCAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAAt                                       <  1:1748648/100‑1 (MQ=21)    ttGCTGATTATTGTGCCAGGACGAATAAACGCATAATGACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAAt                                       <  2:1667524/100‑1 (MQ=255)     tGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATa                                      >  1:1077851/1‑100 (MQ=255)     tGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCACTGAATCTCCAGACAACCATTATCACTTAAATAAGTGATAGTCt                                           <  2:713560/95‑1 (MQ=255)      gCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATAc                                     >  1:17661/1‑100 (MQ=255)      gCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATAc                                     >  1:2509948/1‑100 (MQ=255)      gCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATAc                                     >  1:2454677/1‑100 (MQ=255)       cTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACt                                    <  1:1767821/100‑1 (MQ=255)        tGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTa                                   >  1:2223943/1‑100 (MQ=255)         gATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAg                                  <  1:1801274/100‑1 (MQ=255)           ttattGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACATAAATAAGTGATAGTCTTAATACTa                                   >  1:1419373/1‑97 (MQ=255)            tattGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGttt                               >  2:1901693/1‑100 (MQ=255)               tgtgCCAGGACGAATAAACGCATAATTACTAGTCTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTa                            <  1:377076/100‑1 (MQ=255)                gtgCCAGGACGAATAAACGCATAATTACTAGACTGGCCGCCTGAATCTACAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAg                           <  2:175765/100‑1 (MQ=255)                gtgCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAg                           >  2:343697/1‑100 (MQ=255)                gtgCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAg                           <  1:2779096/100‑1 (MQ=255)                gtgCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAg                           <  1:3031997/100‑1 (MQ=255)                gagCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAg                           >  1:2826091/3‑100 (MQ=255)                  gCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGAc                         >  2:1919711/1‑100 (MQ=255)                    cAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTa                       >  1:685043/1‑100 (MQ=255)                     aGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAg                      >  1:1136249/1‑100 (MQ=255)                     aGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTATTAATACTAGTTTTTAGACtg                       >  2:2097758/1‑98 (MQ=255)                      ggACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGt                     <  2:1440626/100‑1 (MQ=255)                       ggcGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTc                    >  1:2055479/3‑100 (MQ=255)                          gAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCAtt                 <  1:2694609/100‑1 (MQ=255)                           aaTAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTg                >  2:2533876/1‑100 (MQ=255)                              aaaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGgag             <  2:1341799/100‑1 (MQ=255)                                aCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGaa           >  1:1540566/1‑100 (MQ=40)                                 cGCATAATTACTAGACTGGCCCTCTGAATCTCCAGACAACTTATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAAc          <  1:1162449/100‑1 (MQ=255)                                  gCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACa         <  2:1668311/100‑1 (MQ=38)                                   cATAATTACTAGACTGGCCCCCTGTTTTTCCAGACAATCAATATCTCTTAATTAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACa         <  1:194406/99‑1 (MQ=11)                                    aTAATTACTAGACTGGCCCCCTTTATCTTCATACAATCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAAc          <  1:1956969/97‑1 (MQ=11)                                    aTAATTACTAGACTGGCCCCCTGAAACTTCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAga       <  2:2709748/100‑1 (MQ=255)                                     tAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAgat      >  2:47622/1‑100 (MQ=35)                                     tAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAgat      <  1:958632/100‑1 (MQ=35)                                      aaTTACTAGACTGGCCCCCTGAATCTCCAGACAACTAATATAATTTAAATAAGTGATAGTCTTAATACTATTTTTTAGACTAGTCATTGGAGAAAAgatg     <  2:54049/100‑1 (MQ=11)                                      aaTTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTATTTAGACTAGTCATTGGAGAACAgat      >  1:1477290/1‑99 (MQ=18)                                      aaTTACTAGACTGGCCCCCCGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAgatg     >  1:28401/1‑100 (MQ=18)                                        ttACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAgatgat   <  2:2055456/100‑1 (MQ=31)                                        ttACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAgatgat   >  2:671654/1‑100 (MQ=31)                                         tACTAGACTGGCCTCCTGAATCTACAGACAACCAATATCTCTTAAATAAGTGAAAGTCTTAATACTAGTTTTTATTCTAGTCTTTGGATAACAGAtgatt  <  2:368805/100‑1 (MQ=11)                                                                                                |                                             CCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATT  >  NC_000913/381217‑381356

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.