New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1432761	NA (NA)	9 (0.090)	6/170	NT	NA	coding (351/576 nt)	tfaR	Rac prophage; putative tail fiber assembly protein
	?	NC_000913	= 1432785	NA (NA)					coding (375/576 nt)	tfaR	Rac prophage; putative tail fiber assembly protein

GGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGCACAGCCTGGGTGAAGGATACGGAAGCAGAAAAACTGTTCCGGATCCGGGAGGCGGAAGAAACAAAAAACAACCTGATGCAGGTAGCCAGTGAGCATATTGCGCCGCT  >  NC_000913/1432706‑1432850                                                                                |                                                                  ggTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGCACAGTCTGGGTGAAGGATACGGAAGCAGAAAAACTGTTCCGCCTCCCGGATCCGgaacagtt                                               <  2:292896/100‑6 (MQ=1) ggTTATAGCCGGAAGGGGAGTTTCAGAAGTGGAACGGCACAGCCTGGGTGAAGGATACGGAAGCAGAAAAACTGTTCCGCCTCCCGGATCCGgaacag                                                 <  2:1042336/98‑4 (MQ=1)                  gattttCAGAAGTGGAACGGCACAGCCTGGGTGAAGGATACGGAAGCAGAAAAACTGTTCCGGATCCGGGAGGCGGAAGAAACAAAAAACAACCTGATGc                              <  2:2761699/97‑1 (MQ=1)                        cAGAAGTGGAACGGCACAGCCTGGGTGAAGGATACGGAAGCAGAAAAACTGTTCCGGATCCGGGAGGCGGAAGAAACAAAAAACAACCAGAtcggaagag                        >  1:1823214/1‑92 (MQ=1)                                              gcgtcaaGGATACGGAAACAGAAAACATGTTCCGGATAAGGGCGGCGAACTATACAAATAACAACCTCATGCAGGTAGCCAGTGTGCATTTTGCgctgct  <  2:246161/95‑1 (MQ=0)                                                                                |                                                                  GGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGCACAGCCTGGGTGAAGGATACGGAAGCAGAAAAACTGTTCCGGATCCGGGAGGCGGAAGAAACAAAAAACAACCTGATGCAGGTAGCCAGTGAGCATATTGCGCCGCT  >  NC_000913/1432706‑1432850

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.