BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_000913	2,564,525	G→A	100%	M1M (ATG→ATA) †	yffS →	CPZ‑55 prophage; uncharacterized protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,564,525	0	G	A	100.0%	360.1 / ‑6.7	110	M1M (ATG→ATA) †	yffS	CPZ‑55 prophage; uncharacterized protein
Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (56/52); minor base T (0/2); total (56/54)

Only 100 of 110 total aligned reads displayed.

TGATCTGCGTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCG  >  NC_000913/2564429‑2564619

tgATCTGCGTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCTAATGGATTCTATGAGATGGGAGATAAATATAATAAg                                                                                              >  2:2474439/1‑99 (MQ=255)

 gATCTGCGTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGtt                                                                                            <  2:158090/100‑1 (MQ=255)

 gATCTGCGTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGtt                                                                                            <  2:158178/100‑1 (MQ=255)

   tCTGCGTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTAc                                                                                          <  1:2759584/100‑1 (MQ=255)

      gCGTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGCTAAAAATCATAAGTTACGaa                                                                                       >  2:1611617/1‑100 (MQ=255)

      gCGTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGaa                                                                                       >  1:468098/1‑100 (MQ=255)

      gCGTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCCATGAGATGGGAGATAAAAATCATAAGTTACGaa                                                                                       <  1:1837111/100‑1 (MQ=255)

       cGTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGaa                                                                                       >  2:2853092/1‑99 (MQ=255)

        gTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCCATGAGATGGGAGATAAAAATCATAAGTTACGAAAt                                                                                     <  2:1615934/100‑1 (MQ=255)

         tCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAAt                                                                                     >  2:720408/1‑99 (MQ=255)

          cAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCCATGAGATGGGAGATAAAAATCATAAGTTACGAAATCa                                                                                   >  2:557263/1‑100 (MQ=255)

           aaTATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCaa                                                                                  >  1:2668502/1‑100 (MQ=255)

             tatTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATTGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCaaaa                                                                                <  2:957046/100‑1 (MQ=255)

             tatTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCaaaa                                                                                >  2:2977843/1‑100 (MQ=255)

             tatTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCaaaa                                                                                <  2:2629609/100‑1 (MQ=255)

              atTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAAt                                                                               <  1:2363900/100‑1 (MQ=255)

               ttCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAAtt                                                                              >  2:1412133/1‑100 (MQ=255)

                 cccTTCCGTTACGCTTACCTTCAACAAATACGCATGTTAACCTCCCAATAAATTCTATGAGAAGGGAGATAAAAATCATAAGTTACCAAATCAAAAttt                                                                             >  2:618102/1‑99 (MQ=255)

                  ccTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGc                                                                           <  2:765313/100‑1 (MQ=255)

                  ccTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGc                                                                           <  2:1314471/100‑1 (MQ=255)

                  ccTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCCATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGc                                                                           >  1:966703/1‑100 (MQ=255)

                     tCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCCATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGAc                                                                        <  1:202646/100‑1 (MQ=255)

                      ccGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACa                                                                       >  2:2502818/1‑100 (MQ=255)

                         ttACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATcc                                                                    <  2:1592489/100‑1 (MQ=255)

                          tACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCt                                                                   <  1:1985495/100‑1 (MQ=255)

                            cGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCa                                                                 <  2:1808257/100‑1 (MQ=255)

                            cGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCCATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCa                                                                 <  2:2712505/100‑1 (MQ=255)

                             gCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCaa                                                                >  2:1182843/1‑100 (MQ=255)

                             gCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCCATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCaa                                                                <  1:1622775/100‑1 (MQ=255)

                              cTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGAAGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCaaa                                                               >  1:117326/1‑100 (MQ=255)

                                tACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAgg                                                             <  2:2013396/100‑1 (MQ=255)

                                 aCCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCCATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGgc                                                            <  1:2763236/100‑1 (MQ=255)

                                  cccTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGgcg                                                           >  1:619893/1‑100 (MQ=255)

                                   ccTCCACCATTTCGCGTGTTATCCTCCCAATGGATTCCATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGgc                                                            <  1:1489012/98‑1 (MQ=255)

                                   ccTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGgcgc                                                          >  2:1986181/1‑100 (MQ=255)

                                   ccTCCACCAATACGCGTGTTAACCTCCCAATGGATTCCATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGgcgc                                                          >  2:1715950/1‑100 (MQ=255)

                                      ccaccaATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGc                                                       >  2:59700/1‑100 (MQ=255)

                                        accaATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGa                                                     >  2:2244615/1‑100 (MQ=255)

                                         ccaATACGCGTGTTAACCTCGCAATGGATTCCATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGAt                                                    >  1:2863269/1‑100 (MQ=255)

                                           aaTACGCGTGTTAACCTCCCAATGGATTCCATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATgg                                                  >  1:2415130/1‑100 (MQ=255)

                                            aTACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATgaa                                                 <  1:2058619/100‑3 (MQ=255)

                                            aTACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGa                                                 >  2:2151379/1‑100 (MQ=255)

                                             tACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGaa                                                <  1:1258187/100‑1 (MQ=255)

                                              aCGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAg                                               <  1:1049260/100‑1 (MQ=255)

                                               cgcgTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAgg                                              <  1:1447912/100‑1 (MQ=255)

                                                  gtgtTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACa                                           >  2:673213/1‑100 (MQ=255)

                                                   tgtTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACaa                                          >  2:2113071/1‑100 (MQ=255)

                                                    gtTAACCTCCCAATGGATTCCATGAGATGGGAGATAAAAATTATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAat                                         <  1:216301/100‑1 (MQ=255)

                                                    gtTAACCTCCCAATGGATTCCATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAat                                         <  1:557266/100‑1 (MQ=255)

                                                     ttAACCTCCCAATGGATTCCATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAata                                        <  1:301121/100‑1 (MQ=255)

                                                       aaCCTCCCAATTGATTCCATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAAtata                                      <  1:207439/100‑1 (MQ=255)

                                                       aaCCTCCCAATGGATTCTATGAGATAGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAAtata                                      >  2:2580777/1‑100 (MQ=255)

                                                       aaCCTCCCAATGGATTCCATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAAtata                                      <  1:933481/100‑1 (MQ=255)

                                                       aaCCTCCCAATGGATTCCATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAAtata                                      >  1:1929817/1‑100 (MQ=255)

                                                        aCCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATaa                                     >  2:2016809/1‑100 (MQ=255)

                                                         ccTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAAGCGCTGCGATGGAAGGACAATATAAg                                    >  1:1477847/1‑100 (MQ=255)

                                                           tCCCAATGGATTTTATGAGATGGGGGATAAAAATCATAAGTTACGATATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAggg                                  <  1:347234/100‑1 (MQ=255)

                                                           tCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAggg                                  <  2:301806/100‑1 (MQ=255)

                                                           tCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAggg                                  <  1:2549568/100‑1 (MQ=255)

                                                           tCCCAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAggg                                  >  2:495257/1‑100 (MQ=255)

                                                            cccAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGgc                                 >  1:2072320/1‑100 (MQ=255)

                                                            cccAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGgc                                 >  2:333580/1‑100 (MQ=255)

                                                            cccAATGGATTCCATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAg                                    >  2:2385767/1‑97 (MQ=255)

                                                             ccAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGgcg                                >  2:809743/1‑100 (MQ=255)

                                                             ccAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATACTCAAAGGCGCTGCGATGGAAGGACAATATAAGGgcg                                >  2:574226/1‑100 (MQ=255)

                                                             ccAATGGATTCCATGAGATGGGAGATAAAAATCATAAGTTACTAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGgc                                 <  1:1111721/99‑1 (MQ=255)

                                                              cAATGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGgcgc                               >  2:2531254/1‑100 (MQ=255)

                                                                aTGGATTCTATTAGATGGGACATAAATATCATTAGTTACGAAATCATAATTTGCGACTTCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTc                             <  1:2474468/100‑1 (MQ=255)

                                                                aTGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTc                             <  1:1862796/100‑1 (MQ=255)

                                                                 tGGATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCa                            <  2:2299719/100‑1 (MQ=255)

                                                                   gATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAAc                          <  1:1492371/100‑1 (MQ=255)

                                                                   gATTCTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAAc                          >  1:827751/1‑100 (MQ=255)

                                                                    aTTCCATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACg                         <  2:2984313/100‑1 (MQ=255)

                                                                       ccaTGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTgg                      >  2:2589963/3‑100 (MQ=255)

                                                                       cTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTgg                      >  1:2147549/1‑100 (MQ=255)

                                                                       cTATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTgg                      <  2:954061/100‑1 (MQ=255)

                                                                        tATGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGAAGGAAGGACAATATAAGGCCGCTCAACGTggg                     <  1:2042053/100‑1 (MQ=255)

                                                                        caTGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTggg                     >  2:2316778/2‑100 (MQ=255)

                                                                        caTGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGAAAGGACAATATAAGGGCGCTCAACGTggg                     >  1:1242440/2‑100 (MQ=255)

                                                                         aTGAGATGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTgggg                    <  1:1146337/100‑1 (MQ=255)

                                                                           gagaTGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAAGACAATATAAAGGCGCTCAACGTGGGGcc                  >  1:99849/1‑100 (MQ=255)

                                                                             gaTGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGACGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCaa                >  1:36326/1‑100 (MQ=255)

                                                                              aTGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCaaa               >  1:1444147/1‑100 (MQ=255)

                                                                               tGGGAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAAt              >  1:2272510/1‑100 (MQ=255)

                                                                               tGGGACATAAAATCCTTTAGTTACGAATTGTAAATTTGCGACATCCTCAAATGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGc                   <  2:2978283/95‑1 (MQ=255)

                                                                                gggAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATg             >  2:2829749/1‑100 (MQ=255)

                                                                                gggAGATAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATg             <  2:1929794/100‑1 (MQ=255)

                                                                                   agaTAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGcta          <  1:1182854/100‑3 (MQ=255)

                                                                                    gaTAAAAATCATAATTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCgag         <  1:1353514/100‑1 (MQ=255)

                                                                                    gaTAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCgag         >  1:1092715/1‑100 (MQ=255)

                                                                                     aTAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCgagg        <  1:1690369/100‑1 (MQ=255)

                                                                                     aTAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCgagg        <  2:2682014/100‑1 (MQ=255)

                                                                                      tAAAACTCATAATTTAAGAAATCAAAATTTGCGACATTCTCAAAGGCGCAGCGAGGGAAGGACCATATAAGGCCGCACAACGTGGGGCGAAATGCgagga       >  2:2598084/1‑100 (MQ=255)

                                                                                      tAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCgagga       >  2:2195565/1‑100 (MQ=255)

                                                                                      tAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCgagga       >  1:2413104/1‑100 (MQ=255)

                                                                                      tAAAAATCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCgagga       >  1:1755376/1‑100 (MQ=255)

                                                                                         aaaTCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGTTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGAt    <  1:1134086/100‑1 (MQ=255)

                                                                                           aTCATAAGTTACGAACTCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCg  <  2:1471870/100‑1 (MQ=255)

                                                                                           aTCATAAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCg  >  1:1512318/1‑100 (MQ=255)

                                                                                            tCATAAGTTACGAAATCAAAATTTGCTACATCCTCAAAGTCGTTGCTATGGAATGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCg  <  1:1229151/99‑1 (MQ=255)

TGATCTGCGTCAATATTCCCTTCCGTTACGCTTACCCTCCACCAATACGCGTGTTAACCTCCCAATGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCG  >  NC_000913/2564429‑2564619

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`