Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 459,642 A→G 100% E252G (GAA→GGA)  lon → DNA‑binding ATP‑dependent protease La

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913459,6420AG100.0% 391.0 / ‑6.7 117E252G (GAA→GGA) lonDNA‑binding ATP‑dependent protease La
Reads supporting (aligned to +/- strand):  ref base A (2/0);  new base G (44/69);  total (47/70)

Only 100 of 117 total aligned reads displayed.

CAGATGGAGAAATCCCAGCGTGAGTACTATCTGAACGAGCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGAAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAAGAGGCAAAAGAGAAAGCGGAAGCAGAGTTGCAGAAGCTGAAAATGATGTCTCCGAT  >  NC_000913/459545‑459738
                                                                                                 |                                                                                                
 aGATGGAGAAATCCCAGCGTGAGTACTATCTGAACGAGCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGc                                                                                               <  2:2506822/100‑1 (MQ=255)
 aGATGGAGAAATCCCAGCGTGAGTACTATCTGAACGAGCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGc                                                                                               <  1:525402/100‑1 (MQ=255)
  gATGGAGAAATCCCAGCGTGAGTACTATCTGAACGAGCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAg                                                                                                >  1:1331879/1‑98 (MQ=255)
  gATGGAGAAATCCCAGCGTGAGTACTATCTGAACGAGCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGcc                                                                                              >  2:2313155/1‑100 (MQ=255)
  gATGGAGAAATCCCAGCGTGAGTACTATCTGAACGAGCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGcc                                                                                              >  2:1892668/1‑100 (MQ=255)
  gATGGAGAAATCCCAGCGTGAGTACTATCTGAACGAGCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGcc                                                                                              <  1:1738060/100‑1 (MQ=255)
  gATGGAGAAATCCCAGCGTGAGTACTATCTGAACGAGCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGc                                                                                               >  2:1229263/1‑99 (MQ=255)
   attgagaAATCCCAGCGTGAGTACTATTTGAACGAGCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGccc                                                                                             <  1:2777824/97‑1 (MQ=255)
   aTGGAGCACTCCAACCGTGAGTCCTCTCTGAACGAGTAAATGCAAGCTATTCAGAAAGAACTCGGTGACATGGACGACGCGCCGGACGAAAACGGAGccc                                                                                             <  1:562717/100‑1 (MQ=255)
   aTGGAGAAATCCCAGCGTGAGTACTATCTGAACGAGCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGccc                                                                                             <  2:2373728/100‑1 (MQ=255)
     ggAGAAATCCCAGCGTGAGTACTATCTGTACGAGCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTg                                                                                           <  1:107170/100‑1 (MQ=255)
         aaaTCCCAGCGTGAGTACTATCTGAACGAGCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAgc                                                                                       <  1:2668654/100‑1 (MQ=255)
         aaaTCCCAGCGTGAGTACTATCTGAACGAGCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAgc                                                                                       <  2:1293388/100‑1 (MQ=255)
          aaTCCCAGCGTGAGTACTATCTGAACGAGCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAgcg                                                                                      <  1:1791966/100‑1 (MQ=255)
            tCCCAGCGTGAGTACTATCTGAACGAGCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCa                                                                                    <  2:2809527/100‑1 (MQ=255)
             cccAGCGTGAGTACTATCTGAACGAGCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCaa                                                                                   >  1:1295989/1‑100 (MQ=255)
                aGCGTGAGTACTATCTGAACGAGCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAAt                                                                                <  1:1733905/100‑1 (MQ=255)
                    tGAGTACTATCTGAACGAGCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGAc                                                                            >  2:768814/1‑100 (MQ=255)
                    tGAGTACTATCTGAACGAGCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGAc                                                                            >  2:304921/1‑100 (MQ=255)
                     gAGTACTATCTGAACGAGCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGAcg                                                                           >  1:2074281/1‑100 (MQ=255)
                      aGTACTATCTGAACGAGCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGAcgc                                                                          <  2:482175/100‑1 (MQ=255)
                       gTACTATCTGAACGAGCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGAcgc                                                                          >  2:351536/1‑99 (MQ=255)
                         accaTCTGAACGAGCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACgcggc                                                                       <  1:2301139/97‑1 (MQ=255)
                         aCTATCTGAACGAGCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACgcggc                                                                       <  2:737110/100‑1 (MQ=255)
                         aCTATCTGAACGAGCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACgcggc                                                                       <  1:2809495/100‑1 (MQ=255)
                         aCTATCTGAACGAGCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACgcggc                                                                       >  2:2924484/1‑100 (MQ=255)
                          cTATCTGAACGAGCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACgcggcg                                                                      >  2:2052922/1‑100 (MQ=255)
                           tagcTGAACGAGCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACgcggcg                                                                      >  2:2891008/4‑99 (MQ=255)
                           tATCTGAACGAGCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGa                                                                     >  2:596261/1‑100 (MQ=255)
                           tATCTGAACGAGCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACAAAAACGAAGCCCTGAAGCGCAAAATCGACGCGGCGa                                                                     >  1:1114931/1‑100 (MQ=255)
                            aTCTGAACGAGCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGaa                                                                    >  1:78360/1‑100 (MQ=255)
                            aTCTGAACGAGCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGaa                                                                    >  1:1030541/1‑100 (MQ=255)
                            aTCTGAACGAGCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGaa                                                                    >  2:436631/1‑100 (MQ=255)
                            aTCTGAACGAGCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGAACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGaa                                                                    >  1:1674110/1‑100 (MQ=255)
                             tCTGAACGAGCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAg                                                                   <  2:1316582/100‑1 (MQ=255)
                             tCTGAACGAGCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAg                                                                   <  1:2251379/100‑1 (MQ=255)
                              cTGAACGAGCAAATGAAAGCTATACAGAAAGAAGTCAGTGAAATAGACGACGCGCCGGACGAAAACGTAGCCCTGAAGCGAAAAATCGAcgcg                                                                         >  2:674804/1‑93 (MQ=255)
                                gAACGAGCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGAt                                                                 <  1:128133/99‑1 (MQ=255)
                                  aCGAGCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGcc                                                              >  2:2370278/1‑100 (MQ=255)
                                   cGAGCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCg                                                             >  2:194208/1‑100 (MQ=255)
                                   cGAGCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCg                                                             <  1:1673131/100‑1 (MQ=255)
                                     aGCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGaa                                                           >  2:1975933/1‑100 (MQ=255)
                                     aGCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCACTGAAGCGCAAAATCGACGCGGCGAAGATGCCGaa                                                           >  1:1702541/1‑100 (MQ=255)
                                      gCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGaaa                                                          >  1:2254492/1‑100 (MQ=255)
                                      gCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGaaa                                                          <  2:1516167/100‑1 (MQ=255)
                                       cAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAag                                                         <  1:2313181/100‑1 (MQ=255)
                                       cAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAag                                                         <  1:1832386/100‑1 (MQ=255)
                                        aaaTGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAaga                                                        <  1:1892690/100‑1 (MQ=255)
                                           tGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAAGAGGc                                                     >  2:592840/1‑100 (MQ=255)
                                           tGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAAGAGGc                                                     <  2:3032206/100‑1 (MQ=255)
                                           tGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACCCGGCGAAGATGCCGAAAGAGGc                                                     <  2:2102651/100‑1 (MQ=255)
                                           tGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGAAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAagag                                                       >  1:1190380/1‑98 (MQ=255)
                                             aaaGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAAGAGGCaa                                                   >  2:2430368/1‑100 (MQ=255)
                                              aaGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAAGAGGCaaa                                                  <  1:2542052/100‑1 (MQ=255)
                                                gCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAAGAGGCAAAag                                                <  1:1392470/100‑1 (MQ=255)
                                                  tATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAAGAGGCAAAagag                                              <  1:339898/100‑1 (MQ=255)
                                                  tATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAAGAGGCAAAagag                                              <  1:2790996/100‑1 (MQ=255)
                                                   aTTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAAGAGGCAAAAgaga                                             >  2:1334934/1‑100 (MQ=255)
                                                   aTTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAAGAGGCAAAAgaga                                             >  1:1549777/1‑100 (MQ=255)
                                                    ttCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAAGAGGCAAAAGAGaa                                            >  1:2460721/1‑100 (MQ=255)
                                                    ttCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAAGAGGCAAAAGAGaa                                            >  2:1049516/1‑100 (MQ=255)
                                                     tCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGAGGCGAAGATACCGAAAGAGGCAAAAGAGaa                                            >  1:269284/1‑99 (MQ=255)
                                                       agaaagaaCTCGGTGAAATGGACGACGCGCCGGACGAACACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAAGAGGCAAAAGAGAAAGc                                         >  1:1487441/1‑100 (MQ=255)
                                                       agaaagaaCTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAAGAGGCAAAAGAGAAAGc                                         <  1:1229275/100‑1 (MQ=255)
                                                       agaaagaaCTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAAGAGGCAAAAGAGAAAGc                                         >  2:2205766/1‑100 (MQ=255)
                                                        gaatgaaCTCGGTGAAATGGAGGACGCACCGAACGAAAACGGAGCACTGAAGCGCAAAATCGACGCGGAGAAGATGCCGGAAGAGGCAAAAGAGAAAGCg                                        >  2:734910/1‑100 (MQ=255)
                                                        gaaagaaCTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAAGAGGCAAAAGAGAAAGCg                                        <  1:2370305/100‑1 (MQ=255)
                                                         aaagaaCTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAAGAGGCAAAAGAGAAAGCgg                                       <  1:2600381/100‑1 (MQ=255)
                                                           agaaCTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGAAAAATCGACGCGGCGAAGATGCCGAAAGAGGCAAAAGAGAAAGCGGaa                                     <  1:2094312/100‑1 (MQ=255)
                                                               cTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAAGAGGCAAAAGAGAAAGCGGAAGCag                                 >  2:135240/1‑100 (MQ=255)
                                                               cTCGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAAGAGGCAAAAGAGAAAGCGGAAGCag                                 <  2:1549759/100‑1 (MQ=255)
                                                                 cGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAAGAGGCAAAAGAGAAAGCGGAAGCagag                               <  2:45219/100‑1 (MQ=255)
                                                                 cGGTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAAGAGGCAAAAGAGAAAGCGGAAGCagag                               <  2:1078923/100‑1 (MQ=255)
                                                                  ggTGAAATGGACGACTCGCCGGACGAAAACGGAGTCCTGAAGCGCAAAATTGACGCGGCGAAGATGCCGAAAGAGGCAAAAGAGAAAGCGGAAGCAGAGt                              <  1:525487/100‑1 (MQ=255)
                                                                   gTGAAATGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAAGAGGCAAAAGAGAAAGCGGAAGCAGAGtt                             >  2:82796/1‑100 (MQ=255)
                                                                     gAAATGGACGACGCGCCGGACGAAAACTGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAAGAGGCAAAAGAGAAAGCGGAAGCAGAGTTGc                           <  1:1455314/100‑1 (MQ=255)
                                                                      aaaTGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAAGAGGCAAAAGAGAAAGCGGAAGCAGAGTTGCa                          <  1:1164367/100‑1 (MQ=255)
                                                                       aaTGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAAGAGGCAAAAGAGAAAGCGGAAGCAGAGTTGCAg                         <  2:1295977/100‑1 (MQ=255)
                                                                       aaTGGACGACACGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAAGAGGCAAAAGAGAAAGCGGAAGCAGAGTTGCAg                         <  2:1599765/100‑1 (MQ=255)
                                                                        aTGGACGACGCGCCGGACGAAAACGGAGCCCTGAAGCTCAAAATCGACGCGGCGAAGATGCCGAAAGAGGCAAAAGAGAAAGCGGAAGCAGAGTTGCAGa                        <  1:1545460/100‑1 (MQ=255)
                                                                          ggACGACGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAAGAGGCAAAAGAGAAAGCGGAAGCAGAGTTGCAGAAg                      >  2:2572125/1‑100 (MQ=255)
                                                                           gacgacGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAAGAGGCAAAAGAGAAAGCGGAAGCAGAGTTGCAGAAGc                     <  2:1487425/100‑1 (MQ=255)
                                                                           gacgacGCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAAGAGGCAAAAGAGAAAGCGGAAGCAGAGTTGCAGAAGc                     >  2:590602/1‑100 (MQ=255)
                                                                            acgacgCGCCGGACGAAAACGTAGCCCTGAAGCGCAAAATCGACTCGGCGAAGATGCCGAAAGAGGCAAAAGAGAAAGCGGAAGCAGAGTTGCAGAAGCt                    <  1:1042258/100‑1 (MQ=255)
                                                                            acgacgCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAAGAGGCAAAAGAGAAAGCGGAAGCAGAGTTGCAGAAGCt                    <  2:1086864/100‑1 (MQ=255)
                                                                            acgacgCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAAGAGGCAAAAGAGAAAGCGGAAGCAGAGTTGCAGAAGCt                    <  2:2030461/100‑1 (MQ=255)
                                                                            acgacgCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAAGAGGCAAAAGAGAAAGCGGAAGCAGAGTTGCAGAAGCt                    <  2:1468676/100‑1 (MQ=255)
                                                                            acgacgCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCAGAAAAAAGAAAAAGAGAAAGCGGAAGCAGAGTTGCAGAAGc                     <  2:163076/99‑1 (MQ=255)
                                                                             cgacgCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAAGAGGTAAAAGAGAAAGCGGAAGCAGAGTTGCAGAAGCTg                   <  2:648085/100‑1 (MQ=255)
                                                                               acgCGCCGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAAGAGGCAAAAGAGAAAGCGGAAGCAGAGTTGCAGAAGCTGaa                 >  1:1418381/1‑100 (MQ=255)
                                                                                    ccGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAAGAGGCAAAAGAGAAAGCGGAAGCAGAGTTGCAGAAGCTGAAAatga            <  1:1319418/100‑1 (MQ=255)
                                                                                     cGGACGAAAACGGAGCCTTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAAGAGGCAAAAGAGAAAGCGGAAGCAGAGTTGCAGAAGCTGAAAatgat           <  1:1317236/100‑1 (MQ=255)
                                                                                     cGGACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAAGAGGCAAAAGAGAAAGCGGAAGCAGAGTTGCAGAAGCTGAAAatgat           <  2:2569483/100‑1 (MQ=255)
                                                                                      ggACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGTGAAGATGCCGAAAGAGGCAAAAGAGAAAGCGGAAGCAGAGTTGCAGAAGCTGAAAatgatg          <  1:54147/100‑1 (MQ=255)
                                                                                       gACGAAAACGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAAGAGGAAAAAGAGAAAGCGGAAGCAGAGTTGCAGAAGCTGAAAatgat           <  2:379360/98‑1 (MQ=255)
                                                                                           aaaaCGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAAGAGGCAAAAGAGAAAGCGGAAGCAGAGTTGCAGAAGCTGAAAATGATGTCTcc     >  2:2275761/1‑100 (MQ=255)
                                                                                           aaaaCGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAAGAGGCAAAAGAGAAAGCGGAAGCAGAGTTGCAGAAGCTGAAAATGATGTCTcc     <  2:1347915/100‑1 (MQ=255)
                                                                                           aaaaCGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAAGAGGCAAAAGAGAAAGCGGAAGCAGAGTTGCAGAAGCTGAAAATGATGTCTcc     >  2:1128107/1‑100 (MQ=255)
                                                                                            aaaCGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAAGAGGCAAAAGAGAAAGCGGAAGCAGAGTTGCAGAAGCTGAAAATGATGTCTCCg    >  1:2665219/1‑100 (MQ=255)
                                                                                            aaaCGGAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAAGAGGCAAAAGAGAAAGCGGAAGCAGAGTTGCAGAAGCTGAAAATGATGTCTCCg    <  2:896291/100‑1 (MQ=255)
                                                                                                 |                                                                                                
CAGATGGAGAAATCCCAGCGTGAGTACTATCTGAACGAGCAAATGAAAGCTATTCAGAAAGAACTCGGTGAAATGGACGACGCGCCGGACGAAAACGAAGCCCTGAAGCGCAAAATCGACGCGGCGAAGATGCCGAAAGAGGCAAAAGAGAAAGCGGAAGCAGAGTTGCAGAAGCTGAAAATGATGTCTCCGAT  >  NC_000913/459545‑459738

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: