| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 882,722 | G→A | 100% | R5C (CGC→TGC) | deoR ← | deoxyribose‑5‑phosphate‑inducible deoxyribose operon transcriptional repressor; repressor of nupG and tsx |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 882,722 | 0 | G | A | 98.8% | 270.7 / ‑4.4 | 83 | R5C (CGC→TGC) | deoR | deoxyribose‑5‑phosphate‑inducible deoxyribose operon transcriptional repressor; repressor of nupG and tsx |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (38/44); total (38/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.83e-01 | |||||||||||
ATCTCCGAAACCCCAAGCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCGACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCACCCAGCCTTTGCGGA > NC_000913/882628‑882817 | aTCTCCGAAACCCCAAGCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACgtg > 2:1630071/1‑100 (MQ=255) tctcCGAAACCCCAAGCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACgtgt > 1:1733864/1‑100 (MQ=255) ctcCGAAACCCCAAGCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGAAACGTGtt > 1:1812574/1‑100 (MQ=255) tcCGAAACCCCAAGCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGttt > 1:1065433/1‑100 (MQ=255) ccGAAACCCCAAGCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTc > 2:2485393/1‑100 (MQ=255) ccGAAACCCCAAGCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTc < 1:1626190/100‑1 (MQ=255) aaCCCCAAGCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATa < 1:2763148/100‑1 (MQ=255) aaCCCCAAGCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATa > 2:1930745/1‑100 (MQ=255) aCCCCAAGCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATaa < 2:208048/100‑1 (MQ=255) ccccAAGCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAAt < 1:776600/100‑1 (MQ=255) ccAAGCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATcc > 2:1402116/1‑100 (MQ=255) aGCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCctc > 1:2391275/1‑100 (MQ=255) gCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCctct < 1:2370839/100‑1 (MQ=255) gCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTATAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCctct < 2:2132498/100‑1 (MQ=255) cAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGTTGCGTTTTATTTCTTGTAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTg < 1:111297/100‑1 (MQ=255) cAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTg < 2:812435/100‑1 (MQ=255) cAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTg < 2:2416913/100‑1 (MQ=255) gggCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGaa > 1:1890481/1‑100 (MQ=255) ttccgatcttCTTTAAGATGTATCTTATTGCTGCGTTTTAATTTTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATa < 1:788546/91‑1 (MQ=255) gcggcggcgTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGTAACGTGTTTCCATAATCCCTCTGAATa < 2:221497/100‑1 (MQ=255) gcggcggcgTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATa > 1:867147/1‑100 (MQ=255) cggcggtcTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACTTGTTTCCATAATCCCTCTGAATAg < 2:734551/100‑1 (MQ=255) cggcggcgTCTTTAAGATGTAACTAATCGCTGCGTTTTAATTCCTCCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAg < 2:885454/100‑1 (MQ=255) cggcgTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTa < 1:2306959/100‑1 (MQ=255) gcgTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTAtt < 1:1134468/100‑1 (MQ=255) tcttccaGATGTAACTCATCTCTGCGTTTTAATTCTTCCACCAGTTGACCGATCCGCTCTTCGCACCTTCTTTCCATAATCCCTCTTAATAGTTATTGa < 2:12449/93‑1 (MQ=255) tCTTTAAGATGTAACTTATCGCTGCGTATTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATaagatcg > 2:788542/1‑91 (MQ=255) cTTTAAGATGTATCTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAg < 1:1045030/100‑1 (MQ=255) cTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAg > 1:1318506/1‑100 (MQ=255) cTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAg > 1:509168/1‑100 (MQ=255) tttAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGc > 2:1268606/1‑100 (MQ=255) aaGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAg < 2:554898/100‑1 (MQ=255) aGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGc < 1:2617318/100‑1 (MQ=255) aGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCCGAATAGTTATTGAAGCGAGc > 2:2302780/1‑100 (MQ=255) gATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGcc > 1:351075/1‑100 (MQ=255) gATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGcc > 1:1232921/1‑100 (MQ=255) tAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTc > 1:778345/1‑100 (MQ=255) tAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCACTCTGAATAGTTATTGAAGCGAGc > 2:2884385/1‑95 (MQ=255) tAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTACCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTc > 2:492075/1‑100 (MQ=255) aaCTTATCGCTGCGTTTTAATTCTTGCTGCAGCTGCCCGATACGCTTTTTGCAACGTGTTTCCATAAGCCCTCTGAATAGTTATTGAAGCGAGCCGCTCa < 1:10564/100‑1 (MQ=255) aaCTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCa > 2:2586218/1‑100 (MQ=255) aaCTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCa < 2:2861790/100‑1 (MQ=255) aaCTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCa > 2:2245787/1‑100 (MQ=255) cTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAAt < 1:505184/100‑1 (MQ=255) ttATCCTTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAAta < 2:2391248/100‑1 (MQ=255) tATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAAtac > 2:795657/1‑100 (MQ=255) cGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAAtactac < 1:2113579/100‑1 (MQ=255) gCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTaca > 1:738880/1‑100 (MQ=255) tGCGTTTTAATTCTTGCAGCAGCGGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTTAATAGTTATTGAAGCGAGCCGCTCAATACTacac < 2:1785395/99‑1 (MQ=255) tGCGTTTTAAGTCTTGCAGCAGCTGCCCTATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTacac < 2:387564/99‑1 (MQ=255) cGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACttt < 2:2857633/100‑1 (MQ=255) gTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACtttt > 1:1641866/1‑100 (MQ=255) ttttAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACttttt < 1:196300/100‑1 (MQ=255) tttAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTa < 2:778341/100‑1 (MQ=255) ttAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAg < 1:430890/100‑1 (MQ=255) tAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGc > 2:2542192/1‑100 (MQ=255) tAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAATTATTGAAGCAAGCAGCTCAATACTACACTTTTTAGc > 1:915064/1‑100 (MQ=255) aaTTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCa < 2:2693791/100‑1 (MQ=255) aaTTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCa < 2:1768302/100‑1 (MQ=255) aTTCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCag < 2:330965/100‑1 (MQ=255) tCTTGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTTCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCagag < 1:460096/100‑1 (MQ=255) ttGCAGCAGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGAt < 1:2596760/100‑1 (MQ=255) gcagcaGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCa > 2:105388/1‑100 (MQ=255) gcagcaGCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCa < 1:2967041/100‑1 (MQ=255) cagcagCTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAg < 2:2564378/100‑1 (MQ=255) gcagcTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTc > 2:2170390/1‑100 (MQ=255) gcTGCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACg < 2:1641847/100‑1 (MQ=255) gCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCAc > 1:627624/1‑100 (MQ=255) gCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCAc > 2:544226/1‑100 (MQ=255) gCCCGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTAAAGCGAGCCGATCAATACAACACTTTTTAGCAGAGATCAGTCACGCAc > 1:1554073/1‑100 (MQ=255) cccGATACGCTCTTCGCGACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCAcc < 1:1871416/100‑1 (MQ=255) ccGATACGCTCTTCGCAACGTGTTTCTATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCAccc < 2:1944890/100‑1 (MQ=255) ccGATACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCAccc > 2:2424212/1‑100 (MQ=255) aTACGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCACCCAGc < 2:2853803/100‑1 (MQ=255) cGCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCACCCAGCCtt > 1:2867649/1‑100 (MQ=255) gCTCTTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCACCCAGCCttt > 2:2808041/1‑100 (MQ=255) ctctTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCACCCAGCCTTTg > 1:2224894/1‑100 (MQ=255) tctTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTATCAGAGATCAGTAATGCACCCAGCCTTTGc < 2:922837/100‑1 (MQ=255) tctTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCACCCAGCCTTTGc > 1:1403067/1‑100 (MQ=255) ctTCGCAACGTGTTTCCATAATTCCTCTGAATATTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCACCCAGCCTTTGCg < 1:1243406/100‑1 (MQ=255) ctTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCACCCAGCCTTTGCg < 1:2353549/100‑1 (MQ=255) ctTCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCACCCAGCCTTTGCg < 1:2941395/100‑1 (MQ=255) tCGCAACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCACCCAGCCTTTGCGGa > 2:2169987/1‑100 (MQ=255) | ATCTCCGAAACCCCAAGCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCGACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCACCCAGCCTTTGCGGA > NC_000913/882628‑882817 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |