| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,563,518 | (A)5→6 | intergenic (+401/‑74) | yffP → / → yffQ | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,563,513 | 1 | . | A | 81.9% | 214.4 / 42.9 | 72 | intergenic (+396/‑79) | yffP/yffQ | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| Reads supporting (aligned to +/- strand): ref base . (7/6); new base A (26/33); total (33/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.54e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.58e-01 | |||||||||||
GGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGT‑A‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTTAATCG > NC_000913/2563415‑2563607 | ggTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGT‑a > 1:793624/1‑100 (MQ=255) tGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGT‑a‑aa > 2:823231/1‑100 (MQ=255) ttttGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGT‑a‑aaaaat > 1:1027275/1‑98 (MQ=255) tttGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGT‑a‑aaaaatg < 2:1129036/100‑4 (MQ=255) ttGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGT‑a‑aaaaatga < 1:1735060/100‑5 (MQ=255) ttGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGT‑a‑aaaaatga < 1:1543967/100‑5 (MQ=255) gATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAA‑AAAATGAAACg > 2:1478385/1‑100 (MQ=255) tGCAGATCGCTTTTTTTTTTTTTTTATTTTTGTTTAATTCAATCAACGATATGCAGTTTTCATCAACAATATAAAGATGGGAGGT‑A‑AAAATGAAAAGGt > 1:373878/1‑99 (MQ=255) aGATCGCTTTTTCTTTTTAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAA‑AAAATGAAACGGTggg > 1:1469581/1‑100 (MQ=255) aGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGT‑A‑AAAATGAAACGGTGGGa > 2:1256180/1‑100 (MQ=255) gATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATAAAAAGTAA‑AAAATGAAACGGTGGGa < 1:1196841/100‑1 (MQ=255) aTCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAA‑AAAATGAAACGGTGGGa < 1:1050206/99‑1 (MQ=255) tCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGT‑A‑AAAATGAAACGGTGGGAAGt < 1:586890/100‑1 (MQ=255) gCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAA‑AAAATGAAAGGGTGGGaa > 2:1163873/1‑97 (MQ=255) cTTTTTCCCTTCAGGCATTTTTTTTTTTTTTTTTCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAA‑AAAATGAAACGTTCGGa > 1:974848/1‑95 (MQ=255) cTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTgg < 2:137945/100‑1 (MQ=255) cTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTgg < 1:942553/100‑1 (MQ=255) tttttCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGc > 2:1473545/1‑100 (MQ=255) ttttCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGT‑A‑AAAATGAAACGGTGGGAAGTGGCtt < 1:809374/100‑1 (MQ=255) ttttCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGT‑A‑AAAATGAAACGGTGGGAAGTGGCtt > 2:1057071/1‑100 (MQ=255) ttCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCttt < 1:863147/100‑1 (MQ=255) ttCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCttt < 2:1027276/100‑1 (MQ=255) cTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGT‑A‑AAAATGAAACGGTGGGAAGTGGCTTTACTgg < 1:1057070/100‑1 (MQ=255) ttCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTgg < 1:748266/100‑1 (MQ=255) tCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGt > 2:214272/1‑100 (MQ=255) tCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGt < 1:1669263/100‑1 (MQ=255) cAGGCATTTTTGTTTAATTCAATCAACGACAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGT‑ATAAAATGAAACGGTGGGAAGTGGCTTTACTGGTg < 1:1167548/100‑1 (MQ=255) cAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTg < 1:1819215/100‑1 (MQ=255) cAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTg < 2:27667/100‑1 (MQ=255) cAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTg > 2:1409931/1‑100 (MQ=255) aGGCATTTTTTTTTTTTTTTTTCAACGAAAGGCAGTTCCCAACAACAAATTAAAGATGGGAGGTAA‑AAAATGAAACTGTGGGAAGTGGCTTTACTGGt > 1:739373/1‑98 (MQ=255) ggCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGa > 2:620529/1‑99 (MQ=255) ggCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGAt > 2:1598539/1‑100 (MQ=255) cATTTTTGTTTAAGTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATgg < 1:414164/100‑1 (MQ=255) tttttGTTTAATTCAATCAACGAAAGGCAGTTCCCAGCAACAAAATAAAGATGGGAGGT‑A‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTaa < 2:1364906/100‑1 (MQ=255) ttttGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTaa < 1:19617/100‑1 (MQ=255) gTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGtt > 2:315367/1‑100 (MQ=255) tttAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTg < 1:1555085/100‑1 (MQ=255) ttAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTgg < 1:703645/100‑1 (MQ=255) aaTTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGtt > 2:1550109/1‑100 (MQ=255) aTTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGttt > 2:409659/1‑100 (MQ=255) aTTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGttt > 2:1822217/1‑100 (MQ=255) aTTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGttt > 2:70774/1‑100 (MQ=255) caatcaaCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCt > 2:1664173/1‑100 (MQ=255) caatcaaCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGT‑A‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTg > 2:1207310/1‑100 (MQ=255) aatcaaCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTg > 2:494453/1‑100 (MQ=255) tcaaCGAAAGGCAGTACCCAACAACAAAATAAAGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTa < 2:1914054/100‑1 (MQ=255) caaCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTAt > 2:1017256/1‑100 (MQ=255) aCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTg > 1:1661039/1‑100 (MQ=255) aCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTg < 2:434465/100‑1 (MQ=255) cGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGa < 2:1460538/100‑1 (MQ=255) aaaGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAAc < 1:1478377/100‑1 (MQ=255) aaGGCAGTTCCCAACAACAAAATAAAGATGGGAGGT‑A‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACtg > 1:190262/1‑100 (MQ=255) ggCAGTTCCCAACAACAAAATAAAGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACtgt > 1:234773/1‑100 (MQ=255) gCAGTTCCCAACAACAAAATAAAGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACtgtg < 1:189513/100‑1 (MQ=255) cAGTTCCCAACAACAAAATAAAGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGa < 1:250700/100‑1 (MQ=255) aGTTCCCAACAACAAAATAAAGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGaa > 2:158773/1‑100 (MQ=255) gTTCCCAACAACAAAATAAAGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAag < 1:823230/100‑1 (MQ=255) ttCCCAACAACAAAATAAAGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAagg < 1:1215070/100‑1 (MQ=255) tCCCAACAACAAAATAAAGATGGGAGGTAA‑AAAACGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAagga < 1:1030220/100‑1 (MQ=255) cccAACAACAAAATAAAGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAagga < 2:793626/99‑1 (MQ=255) cccAACAACAAAATAAAGATGGGAGGT‑A‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAaggagg > 2:1432939/1‑100 (MQ=255) aacaacaaAATAAAGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGAc > 1:1167019/1‑100 (MQ=255) acaacaaAATAAAGATGGGAGGT‑A‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGc > 1:869587/1‑100 (MQ=255) caacaaAATAAAGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGc > 1:283068/1‑100 (MQ=255) caaAATAAAGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGTTGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCAt > 2:787416/1‑100 (MQ=255) aaaTAAAGATGGGAGGT‑A‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGaa < 2:883148/100‑1 (MQ=255) aaTAAAGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGaa > 2:1795418/1‑100 (MQ=255) tAAAGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAAc < 1:259488/100‑1 (MQ=255) aaGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACtt < 1:44074/100‑1 (MQ=255) aGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACttt < 2:449037/100‑1 (MQ=255) aGATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACttt < 1:214271/100‑1 (MQ=255) gATGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACtttt < 1:1441021/100‑1 (MQ=255) aTGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTTa < 1:1724253/100‑1 (MQ=255) aTGGGAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTTa > 2:1663160/1‑100 (MQ=255) gggAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTTAAt < 2:974849/100‑1 (MQ=255) gAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGATCTGTGAAGGAGGACGCCATGAAACTTTTAATCg < 1:1167365/100‑1 (MQ=255) gAGGTAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTTAATCg < 2:1600562/100‑1 (MQ=255) | GGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGT‑A‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTTAATCG > NC_000913/2563415‑2563607 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |