| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,881,128 | C→A | E228* (GAA→TAA) | dmlR ← | transcriptional activator of dmlA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,881,128 | 0 | C | A | 93.8% | 252.4 / 9.4 | 81 | E228* (GAA→TAA) | dmlR | transcriptional activator of dmlA |
| Reads supporting (aligned to +/- strand): ref base C (3/2); new base A (39/37); total (42/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.33e-01 | |||||||||||
ACTTGCACTAAATGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTCTCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATCGCGCTCTT > NC_000913/1881031‑1881223 | aCTTGCACTAAATGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTtatc < 2:1213920/100‑1 (MQ=255) cACTAAATGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGa > 1:1544170/1‑100 (MQ=255) aCTAAATGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTCTCCATGAt > 2:1594907/1‑100 (MQ=255) aCTAAATGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGAt > 2:1638387/1‑100 (MQ=255) cTAAATGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGAtt > 1:295035/1‑100 (MQ=255) aaaTGACCACTGGCAATGTTTTCGCTAACGTCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAg > 2:1683373/1‑100 (MQ=255) aaaTGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAg > 2:970053/1‑100 (MQ=255) aaTGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCTATGATTAg > 2:1330306/1‑99 (MQ=255) aTGACCACTGGCAATGTTTTCGCTAACATCGCACCAGGAACTCAGAGCAATCCCCTACCCATCGAGACACCACTGATGGACAATTTATCCATGATTAgac < 1:750203/100‑1 (MQ=255) aCCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAgacgac < 2:642664/100‑1 (MQ=255) ccACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACa > 2:127194/1‑100 (MQ=255) ccACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACa > 1:871184/1‑100 (MQ=255) ccACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACa > 1:1574660/1‑100 (MQ=255) cTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTCTCCATGATTAGACGACAGTg > 2:1342302/1‑100 (MQ=255) naaTGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGcc > 2:1577261/2‑100 (MQ=255) cAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGcc > 1:51561/1‑100 (MQ=255) cAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGcc < 1:1476673/100‑1 (MQ=255) cAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGcc < 2:364436/100‑1 (MQ=255) cAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGcc < 2:1253457/100‑1 (MQ=255) aTGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCgg < 1:1297772/100‑1 (MQ=255) aTGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCgg < 2:1013898/100‑1 (MQ=255) tGTTTTCGCTAACATCCCACCAGGAACGCGGAGCAATCCCCTGCCCATCGAGCCACCACTGATGGACAATTTATCCATCATTAGACGACaaggg > 1:1158383/1‑90 (MQ=255) gTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTg > 2:1729710/1‑100 (MQ=255) gTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTg > 1:636088/1‑100 (MQ=255) gTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTg < 2:1414852/100‑1 (MQ=255) gTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCCAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGACCg > 1:337261/1‑97 (MQ=255) tttCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGAc < 1:35432/100‑1 (MQ=255) ttCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACt < 2:871185/100‑1 (MQ=255) tCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACtt > 2:793037/1‑100 (MQ=255) cGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACttt < 1:187223/100‑1 (MQ=255) aaCATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATc < 2:1250053/100‑1 (MQ=255) aaCATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATc < 1:1649062/100‑1 (MQ=255) aTCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCa < 1:1289656/100‑1 (MQ=255) aTCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCa < 2:382984/100‑1 (MQ=255) tCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGAGGACAGTGGGCAGGTGACTTTAATCg > 1:1203/1‑97 (MQ=255) tCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCAt < 1:47682/100‑1 (MQ=255) caccaGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATggg > 2:510718/1‑100 (MQ=255) accaGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTCTCCATGATTAGACGACATTGGGCCGGTGACTTTAATCGCATgggg > 1:1022382/1‑100 (MQ=255) accaGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATgggg > 2:642173/1‑100 (MQ=255) aGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGcc < 1:1469878/100‑1 (MQ=255) aGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGcc < 1:420826/100‑1 (MQ=255) aGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGcc < 1:1661570/100‑1 (MQ=255) ggAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCct < 2:51561/100‑1 (MQ=255) cGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCcttctt > 2:1302727/1‑100 (MQ=255) cAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTa < 1:644072/100‑1 (MQ=255) cAGAGCAATCCCCTGCCCATCGAGACACCACTGAGGGGCAATTTATCCATGATTAGGCGCCAGTGGGCCGGTTACTTTACTCGCATGGGAGCct > 1:510450/1‑94 (MQ=255) agagCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGTCGGGTGACTTTGATGGCATGGGGGCCTTCTTTAt > 1:1608566/1‑100 (MQ=255) agagCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTAt < 2:530100/100‑1 (MQ=255) nagCAATCTCCAGCCCATCGAGACACCACTGAGGGACAATTTATCCATGATTAGGCGACAGTGGGACGGAGACAATAATCACATGGCGGActtct > 1:163568/2‑95 (MQ=255) agCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTg < 1:970052/100‑1 (MQ=255) agCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTg < 2:114379/100‑1 (MQ=255) agCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTg < 1:1479648/100‑1 (MQ=255) gCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTAtt > 1:280365/1‑98 (MQ=255) gCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGCGGCCCGGTGACTTTAATCGCATAGGGGCCTTCGTTATTGc > 1:112779/1‑100 (MQ=255) aTCCCCTGCCCATCCAAACACCACTGATTGACAATTTATCCATGATTAGACTACAGTGGGCCGGTTACTTTAATCGCATGGGCGCCTTCTTTATTGCGTa < 1:1531849/100‑1 (MQ=255) cccTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAAtt > 1:1461590/1‑100 (MQ=255) ccTGCCCATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTg < 1:297906/100‑1 (MQ=255) cccATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAg < 2:295037/100‑1 (MQ=255) cccATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAg < 1:436352/100‑1 (MQ=255) ccATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGa < 1:1191530/100‑1 (MQ=255) cATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGac < 1:112358/100‑1 (MQ=255) cATCGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGac < 1:29711/100‑1 (MQ=255) cGAGACACCACTGATGGACAATTTATCCATGATTAGACGACAGGGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGaca > 2:301998/1‑98 (MQ=255) gagaCACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCa > 2:844324/1‑100 (MQ=255) gaCACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCaaa > 1:1692262/1‑100 (MQ=255) gaCACCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCaaa > 1:774109/1‑100 (MQ=255) acacCACTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCaaaa < 2:1303855/100‑1 (MQ=255) caccacTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAg < 1:1209589/100‑1 (MQ=255) accacTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAgg < 2:1749091/100‑1 (MQ=255) ccacTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGga > 1:1383799/1‑100 (MQ=255) ccacTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTACCAGACACCaaaa > 1:137663/1‑97 (MQ=255) cacTGATGGACAATTTCTCCATGATTAGACGCCAGTGGGCCGGTGACTTTAAGCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGgat < 1:1594896/100‑1 (MQ=255) acTGATGGACAATTTCTCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGgatg < 2:292870/100‑1 (MQ=255) cTGATGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGgatg > 1:666845/1‑99 (MQ=255) aTGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATcg < 1:844323/100‑1 (MQ=255) tGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATcgc > 1:1912765/1‑100 (MQ=255) tGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATcgc > 2:66267/1‑100 (MQ=255) tGGACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATcgc < 2:1574671/100‑1 (MQ=255) gACAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATCgcgc > 2:708695/1‑100 (MQ=255) cAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATCGCGctc > 2:182845/1‑100 (MQ=255) cAATTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATCGCGctc > 1:1868108/1‑100 (MQ=255) aTTTATCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGAGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATCGCGCTCtt > 1:662652/1‑100 (MQ=255) | ACTTGCACTAAATGACCACTGGCAATGTTTTCGCTAACATCCCACCAGGAACGCAGAGCAATCCCCTGCCCATCGAGACACCACTGATGGACAATTTCTCCATGATTAGACGACAGTGGGCCGGTGACTTTAATCGCATGGGGGCCTTCTTTATTGCGTAATTGCCAGACACCAAAAGGATGATCGCGCTCTT > NC_000913/1881031‑1881223 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |