| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,173,076 | C→A | pseudogene (287/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,173,076 | 0 | C | A | 96.2% | 265.4 / 2.7 | 79 | pseudogene (287/442 nt) | gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| Reads supporting (aligned to +/- strand): ref base C (0/3); new base A (32/44); total (32/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.68e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.44e-01 | |||||||||||
TGAAAATACCGGTCAGATAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACCGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGAT > NC_000913/2172980‑2173169 | tGAAAATACCGGTCAGATAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGcc > 2:1560930/1‑100 (MQ=255) gAAAATACCGGTCAGATAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGccc < 2:1732381/100‑1 (MQ=255) aaaaTACCGGTCAGATAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGcccn < 1:1425430/100‑2 (MQ=255) aaaaTACCGGTCAGATAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCt < 2:1867739/100‑1 (MQ=255) taacGGTCAGATAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATc < 1:645342/97‑1 (MQ=255) tACCGGTCAGATAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATc < 2:1097983/100‑1 (MQ=255) tACCGGTCAGATAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATc < 1:1353731/100‑1 (MQ=255) cGGTCAGATAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGACAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCa > 1:377961/1‑99 (MQ=255) ggTCAGATAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCAtt > 1:670269/1‑100 (MQ=255) ggTCAGATAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCAtt < 2:1601140/100‑1 (MQ=255) cAGATAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGaa > 2:495967/1‑100 (MQ=255) cAGATAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGaa > 1:1878832/1‑100 (MQ=255) gATAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGc > 2:1811005/1‑100 (MQ=255) aaaTTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGccac < 1:74659/100‑1 (MQ=255) aaaTTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGccac < 1:1888919/100‑1 (MQ=255) aaTTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGccacc < 1:1413198/100‑1 (MQ=255) aaTTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGccacc < 1:425630/100‑1 (MQ=255) aaTTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAACccacc > 1:153103/1‑100 (MQ=255) tGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCCGTAACCAGGTAATGGGGGGACAGCCCTGATCCATTGAAGgcacca > 1:1617624/1‑98 (MQ=255) tGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATa > 2:1012111/1‑100 (MQ=255) tGCACCGATAATAATGAAACCGGAAATATTTTGCGGGGATAAAACCTGAATCAGTAACCAGCTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATa < 1:955386/100‑1 (MQ=255) cACCGATGATAGTGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATAc > 1:1027117/1‑99 (MQ=255) cGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATAccccc < 1:785991/100‑1 (MQ=255) gATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCg > 1:1926505/1‑100 (MQ=255) aataatGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCt < 2:1582390/100‑1 (MQ=255) ataatGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGAGACCAGGTAATGGGAGAACAGCGCTGATCCATCCAAGCCACCATACCCCCGGCt > 1:1568523/1‑99 (MQ=255) aatGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACCGCCCTGATCCATTGAAGCCACCATACCCCCGGCtttt < 1:764666/100‑1 (MQ=255) aatGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCtttt < 1:1706374/100‑1 (MQ=255) aatGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCtttt < 2:228278/100‑1 (MQ=255) atGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTa > 1:803785/1‑100 (MQ=255) tGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTaa < 2:60026/100‑1 (MQ=255) tGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTaa < 2:803787/100‑1 (MQ=255) tGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTaa < 2:978613/100‑1 (MQ=255) gAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAAc < 2:1698159/100‑1 (MQ=255) gAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAAc < 1:965163/100‑1 (MQ=255) aCCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGcc < 2:241581/100‑1 (MQ=255) ccGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGccc < 1:1151080/100‑1 (MQ=255) ccGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGccc < 2:1050890/100‑1 (MQ=255) gAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGc > 1:244925/1‑100 (MQ=255) atatTTTGCGGGGAGAAAGCCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATCCCCCCGGCTTTTAACGCCCCAGCAt < 2:626567/100‑1 (MQ=255) tatTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCAtt < 2:1031035/100‑1 (MQ=255) atTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTa > 2:1801208/1‑100 (MQ=255) ttttGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAg < 2:47833/100‑1 (MQ=255) ttttGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAg < 2:244927/100‑1 (MQ=255) ttttGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAg > 1:553530/1‑100 (MQ=255) ttGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAgcc > 2:1043400/1‑100 (MQ=255) cGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACCGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAgccgcc < 1:1892397/100‑1 (MQ=255) cGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAgccgcc < 2:770996/100‑1 (MQ=255) gggAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAg > 2:1162199/1‑100 (MQ=255) gggAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAg < 2:1189346/100‑1 (MQ=255) agaAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTg < 2:1777116/100‑1 (MQ=255) agaAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTg < 2:1683062/100‑1 (MQ=255) agaAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTg < 2:294502/100‑1 (MQ=255) gaAAACCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTgg > 1:16676/1‑100 (MQ=255) aaaaCCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTggg < 1:1528519/100‑1 (MQ=255) aaaCCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTGGgt < 1:1416427/100‑1 (MQ=255) aaCCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTGGgtg < 2:231605/100‑1 (MQ=255) aaCCTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTGGgtg > 2:306387/1‑100 (MQ=255) ccTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAACCGCCAGTTGGgtg > 2:934015/1‑98 (MQ=255) cTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTGGGTGTGc < 1:94136/100‑1 (MQ=255) cTGAATCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTGGGTGTGc > 2:68625/1‑100 (MQ=255) tCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTGGGTGTGCAAAcc < 2:1669132/100‑1 (MQ=255) tCAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTGGGTGTGCAAAcc < 2:1222868/100‑1 (MQ=255) cAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTGGGTGTGCAAACCa < 1:1489185/100‑1 (MQ=255) cAGTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTGGGTGTGCAAACCa > 1:414614/1‑100 (MQ=255) gTAACCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTGGGTGTGCAAACCaa > 1:177950/1‑99 (MQ=255) aCCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTGGGTGTGCAAACCAATAGt > 1:1376424/1‑100 (MQ=255) aCCAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTGGGTGTGCAAACCAATAGt < 1:1175481/100‑1 (MQ=255) cAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATCCCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTGGGTGTGCAAACCAATAGttt < 2:1095880/100‑1 (MQ=255) cAGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTGGGTGTGCAAACCAATAGttt > 1:1326015/1‑100 (MQ=255) aGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTg > 2:1748149/1‑100 (MQ=255) aGGTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTg > 2:1397274/1‑100 (MQ=255) ggTAATGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGc < 1:1924369/100‑1 (MQ=255) tGGGAGAACCGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTcgc < 2:1927172/100‑1 (MQ=255) tGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTcgc < 1:1810994/100‑1 (MQ=255) tGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTcgc > 1:1153976/1‑100 (MQ=255) tGGGAGAACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTcgc > 1:259111/1‑100 (MQ=255) gagaACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTGGCGAt > 1:1758708/1‑100 (MQ=255) gagaACAGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGAt > 1:712154/1‑100 (MQ=255) | TGAAAATACCGGTCAGATAAATTGCACCGATAATAATGAAACCGGGAATATTTTGCGGGGAGAAAACCTGAATCAGTAACCAGGTAATGGGAGAACCGCCCTGATCCATTGAAGCCACCATACCCCCGGCTTTTAACGCCCCAGCATTAGCCGCCAGTTGGGTGTGCAAACCAATAGTTTGCGTCGCGAT > NC_000913/2172980‑2173169 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |