| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2280409 = | 66 (0.720) | 13 (0.150) | 8/164 | NT | 20.2% | coding (75/696 nt) | rsuA | 16S rRNA pseudouridine(516) synthase |
| ? | NC_000913 | 2280436 = | 42 (0.500) | coding (48/696 nt) | rsuA | 16S rRNA pseudouridine(516) synthase | |||||
GACCTCCGTTTTTACAGGCAAAATCACACACATGCGACTTGATAAATTTATCGCACAGCAACTCGGCGTTAGCCGTGCTATTGCCGGGCGTGAAATCCGCGGCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2280514‑2280409‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcaatAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAAAACGGAGGTCGGGCATTGACCCGAAAATCT > NC_000913/2280436‑2280534 gcCCTCCGTTTTTACAGGCAAAATCACACACATGCGACTTGATAAATTTATCGCACAGCAACTCGGCGTTAGCCGTGCTATTGCCGGGCGTGAAATCCGC > 1:1728774/3‑100GACCTCCGTTTTTACAGGCAAAATCACACACATGCGACTTGATAAATTTATCGCACAGCAACTCGGCGTTAGCCGTGCTATTGCCGGGCGTGAAATCCGC < 2:1984435/100‑1 ACCTCCGTTTTTACAGGCAAAATCACACACATGCGACTTGATAAATTTATCGCACAGCAACTCGGCGTTAGCCGTGCTATTGCCGGGCGTGAAATCCGCG < 2:169263/100‑1 ACCTCCGTTTTTACAGGCAAAATCACACACATGCGACTTGATAAATTTATCGCACAGCAACTCGGCGTTAGCCGTGCTATTGCCGGGCGTGAAATCCGCG > 1:139204/1‑100 CCTCCGTTTTTACAGGCAAAATCACACACATGCGACTTGATAAATTTATCGCACAGCAACTCGGCGTTAGCCGTGCTATTGCCGGGCGTGAAATCCGCGG < 1:119209/100‑1 CCTCCGTTTTTACAGGCAAAATCACACACATGCGACTTGATAAATTTATCGCACAGCAACTCGGCGTGAGCCGTGCTATTGCCGGGCGTGAAATCCGCGG < 2:1776695/100‑1 CTCCGTTTTTACAGGCAAAATCACACACATGCGACTTGATAAATTTATCGCACAGCAACTCGGCGTTAGCCGTGCTATTGCCGGGCGTGAAATCCGCGGC > 1:2270006/1‑100 CTCCGTTTTTACAGGCAAAATCACACACATGCGACTTGATAAATTTATCGCACAGCAACTCGGCGTTAGCCGTGCTATTGCCGGGCGTGAAATCCGCGGC < 1:1295015/100‑1 TCCGTTTTTACAGGCAAAATCACACACATGCGACTTGATAAATTTATCGCACAGCAACTCGGCGTTAGCCGTGCTATTGCCGGGCGTGAAATCCGCGGCA > 1:1024350/1‑100 CCGTTTTTACAGGCAAAATCACACACATGCGACTTGATAAATTTATCGCACAGCAACTCGGCGTTAGCCGTGCTATTGCCGGGGGTGAAATCCGCGGCAA > 2:1498416/1‑100 CCGTTTTTACAGGCAAAATCACACACATGCGACTTGATAAATTTATCGCACAGCAACGCGGCGTTAGCCGTGCTATTGCCGGGCGTGAAATCCGCGGCAA > 2:1794427/1‑100 CCGTGCTATTGCCGGGCGTGAAATCCGCGGCAATAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGT > 1:2340060/1‑100 CGTGCTATTGCCGGGCGTGAAATCCGCGGCAATAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGT > 2:615398/1‑99 GTGCTATTGCCGGGCGTGAAATCCGCGGCAATAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAA > 1:857907/1‑100 TGCTATTGCCGGGCGTGAAATCCGCGGCAATAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAA > 1:436704/1‑100 TGCTATTGCCGGGCGTGAAATCCGCGGCAATAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAA > 1:545720/1‑100 GCTATTGCCGGGCGTGAAATCCGCGGCAATAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAAA > 1:814916/1‑100 GCTATTGCCGGGCGTGAAATCCGCGGCAATAGCACGGCTAACGCCGAGTTGATGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAAA > 2:410014/1‑100 CTATTGCCGGGCGTGAAATCCGCGGCAATGGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAAAA > 1:556127/1‑100 CTATTGCCGGGCGTGAAATCCGCGGCAATAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAAAA > 1:341361/1‑100 CTATTGCCGGGCGTGAAATCCGCGGCAATAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAAAA > 2:2113734/1‑100 ATTGCCGGGCGTGAAATCCGCGGCAATAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAAAACG > 1:1924759/1‑100 ATTGCCGGGCGTGAAATCCGCGGCAATAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAAAACG > 1:182372/1‑100 GCCGGGCGTGAAATCCGCGGCAATAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAAAACGGAG > 1:2181799/1‑100 CGGCAATAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAAAACGGAGGTCGGGCATTGACCCGA > 2:454297/1‑100 CGGCAATAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAAAACGGAGGTCGGGCATTGACCCGA > 2:454284/1‑100 CGGCAATAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAAAACGGAGGTCGGGCATTGACCCGA > 2:454283/1‑100 CAATAGCAGGGCGAACGGCGAGTTGCGGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAAAACGGATGTCGGGCATTGACCCGAAAA < 2:1067189/100‑1 CAATAGCACGGCTAACGCCGAGTTGCCGTGCGATAAATTTATCAAGTCGCAAGTGTGTGATTTTGCCTGTAAAAACGGAGGTCGGGCATTGACCCGGAA > 2:689537/1‑99 AATAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAAAACGGAGGTCGGGCATTGACCCGAAAAT < 2:322160/100‑1 ATAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAAAACGGAGGTCGGGCATTGACCCGAAAATC < 2:384935/100‑1 ATAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAAAACGGAGGTCGGGCATTGACCCGAAAATC > 1:875150/1‑100 ATAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAAAACGGAGGTCGGGCATTGACCCGAAAATC < 1:1582354/100‑1 TAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAAAACGGAGGTCGGGCATTGACCCGAAAATCT < 2:268445/100‑1 GACCTCCGTTTTTACAGGCAAAATCACACACATGCGACTTGATAAATTTATCGCACAGCAACTCGGCGTTAGCCGTGCTATTGCCGGGCGTGAAATCCGCGGCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2280514‑2280409‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcaatAGCACGGCTAACGCCGAGTTGCTGTGCGATAAATTTATCAAGTCGCATGTGTGTGATTTTGCCTGTAAAAACGGAGGTCGGGCATTGACCCGAAAATCT > NC_000913/2280436‑2280534 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |