New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3281702 =	NA (NA)	9 (0.110)	6/164	NT	NA	noncoding (1/82 nt)	REP239 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP239 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	3281734 =	NA (NA)					noncoding (33/82 nt)	REP239 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP239 (repetitive extragenic palindromic) element; contains 2 REP sequences

AGATAAAGGAAGCAAAAGGGATTGCTGGATGCGGCGCAAACGCTTTATCCGGCCTTGCGGTCACCAACTGTAGGTCGGATAAGACGCGTTAGCGTCGCATCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3281806‑3281702 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccgacCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGT  >  NC_000913/3281734‑3281832                                                                                                                                                                                                              AGATAAAGGAAGCAAAAGGGATTGCTGGATGCGGCGCAAACGCTTTATCCGGCCTTGCGGTCACCAACTGTAGGTCGGATAA‑A‑GCGTTTGCGCCGCATCC                                                                                                        <  2:979817/100‑1   ATAAAGGAAGCAAAAGGGATTGCTGGATGCGGCGCAAACGCTTTATCCGGCCTTGCGGTCACCAACTGTAGGTCGGATAAGACGCGTTAGCGTCGCATCC                                                                                                        >  1:1204871/1‑100    cttccgatctAAAAGGGATTGCTGGATGCGGCGCAAACGCTTTATCCGGCCTTGCGGTCACCAACTGTAGGTCGGATAAGACGCGTTAGCGTCGCATCCG                                                                                                       <  1:1260709/90‑1      AAGGAAGCAAAAGGGATTGCTGGATGCGGCGCAAACGCTTTATCCGGCCTTGCGGTCACCAACTGTAGGTCGGATAAGACGCGTTAGCGTCGCATCCGAC                                                                                                     >  1:360842/1‑100              AAAAGGGATTGCTGGATGCGGCGCAAACGCTTTATCCGGCCTTGCGGTCACCAACTGTAGGTCGGATAAGACGCGTTAGCGTCGCATCCGAgatcggaag                                                                                             >  2:1260701/1‑91                                                                 CAACTGTAGGTCGGATAAGACGCGTTAGCGTCGCATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTT                                          >  1:164384/1‑100                                                                        AGGTCGGATAAGACGCGTTAGCGTCGCATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCC                                   >  1:2047293/1‑100                                                                          GTCGGATAAGACGCGTTAGCGTCGCATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTT                                 >  1:110518/1‑100                                                                          GTCGGATAAGACGCGTTAGCGTCGCATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGCTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTT                                 >  2:2258347/1‑100                                                                            CGGATAAGACGCGTTAGCGTCTTATCCGACCTACAGTTAGTGACCGCAAGGCCGGTTAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTAGCTTCCTTT                                >  2:1169731/1‑99                                                                             GGATAAGACGCGTTAGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTAT                              >  2:1441342/1‑100                                                                             GGATAAGACGCGTTAGCGTCGCATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTAT                              >  1:807680/1‑100                                                                             GGATAAGACGCGTTAGCGTCGCATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTATCGACGCATACAGCAATCCCTTTTGCTTCCTGTAT                              >  2:1123986/1‑100                                                                                TAAGACGCGTTAGCGTCGCATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTT                           >  2:2202286/1‑100                                                                                                   ATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAA        >  2:1288179/1‑100                                                                                                   ATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAA        >  2:451155/1‑100                                                                                                   ATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAA        >  2:698799/1‑100                                                                                                   ATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCGTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAA        >  2:1550234/1‑100                                                                                                      CGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTT     <  1:763273/100‑1                                                                                                       GACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTCATCTTTTCTTTCAACGATCACAAATTTC    >  2:1214333/1‑100                                                                                                        ACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCG   <  1:1371913/100‑1                                                                                                         CCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGT  <  2:1430185/100‑1                                                                                                                                                                                                              AGATAAAGGAAGCAAAAGGGATTGCTGGATGCGGCGCAAACGCTTTATCCGGCCTTGCGGTCACCAACTGTAGGTCGGATAAGACGCGTTAGCGTCGCATCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3281806‑3281702 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccgacCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGT  >  NC_000913/3281734‑3281832

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.