New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3765547 =0 (0.000)23 (0.270) 5/168 NT 32.2% coding (3365/4134 nt) rhsA Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor
?NC_000913 3767284 = 97 (1.130)pseudogene (64/945 nt) rhsJ Rhs‑family protein

TGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGAC  >  NC_000913/3765448‑3765629
                                                                                                   |                                                                                  
gtcgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggtttttcatctgctccacggtcaggccgcacgatgccagccagcgg                                                                                    <  2:2301531‑M1/1‑1 (MQ=255)
 tcgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggtttttcatctgctccacggtcaggccgcacgatgccagccagcggc                                                                                   <  1:1383041‑M1/2‑1 (MQ=255)
  cgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggtttttcatctgctccacggtcaggccgcacgatgccagccagcggcg                                                                                  <  1:1046568‑M1/3‑1 (MQ=255)
  cgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggtttttcatctgctccacggtcaggccgcacgatgccagccagcggcg                                                                                  >  1:2368493‑M1/98‑100 (MQ=255)
   gcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggtttttcatctgctccacggtcaggccgcacgatgccagccagcggcgg                                                                                 >  2:1906187‑M1/97‑100 (MQ=255)
   gcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggtttttcatctgctccacggtcaggccgcacgatgccagccagcggcgg                                                                                 <  1:611753‑M1/4‑1 (MQ=255)
    cagtggtacaggtggatttttcgctctttcgtgtacaccgggtccatctggtttttcatctgctccacggtcaggccgcacgatgccagccagcggcggc                                                                                <  2:424526‑M1/5‑1 (MQ=255)
    cagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggtttttcatctgctccacggtcaggccgcacgatgccagccagcggcggc                                                                                >  1:46402‑M1/96‑100 (MQ=255)
    cagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatccggtttttcatctgctccacggtcaggccgcacgatgccagccagcggcggc                                                                                <  2:2097582‑M1/5‑1 (MQ=255)
                                                                   ccgatcttcaggccgcacggtgccagccagcgGC‑‑‑CTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTg              >  1:84790‑M1/33‑100 (MQ=255)
                                                                      acggtcaggccgcacggtgccagccagcgGC‑‑‑CTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTAc           <  1:949324‑M1/71‑1 (MQ=255)
                                                                       cggtcaggccgcacggtgccagccagcgGC‑‑‑CTGAACGTGGAGCAGATGCAAAACCAGATGGACCGGGTGTACACGCCGGCGCGAAAAATCCACCTgtagc          <  2:593858‑M1/72‑3 (MQ=255)
                                                                       cggtcaggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGt             <  1:1675502‑M1/72‑1 (MQ=255)
                                                                        ngtcaggccgcacgatgccagccagcgGC‑‑‑CTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCa         <  2:1996713‑M1/73‑1 (MQ=255)
                                                                         gtcaggccgcacgatgccagccagcgGC‑‑‑CTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCAc        <  1:420775‑M1/74‑1 (MQ=255)
                                                                          tcaggccgcacggtgccagccagcgGC‑‑‑CTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAAtccacctgagatcgg       <  2:84789‑M1/75‑8 (MQ=255)
                                                                           caggccgcacgatgccagccagcgGCGGCCTGACGGTGGCGCAGATGCAAAGCCAGATGGACCCGGTATACACGCCGGCGCGAAAAATTCACCTGTACCa         <  2:1771826‑M1/76‑1 (MQ=255)
                                                                           caggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCa         <  1:741288‑M1/76‑1 (MQ=255)
                                                                           caggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCa         <  2:2527525‑M1/76‑1 (MQ=255)
                                                                            aggccgcacggtgccagccagcgGC‑‑‑CTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGc     <  1:41606‑M1/77‑1 (MQ=255)
                                                                            aggccgcacgatgccagccagcgGCGGCCTGGCCGTGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGACAAATCCACCTGTACCACt       <  2:2402612‑M1/77‑1 (MQ=255)
                                                                            aggccgcacgatgccagccagcgGCGGCCTGACGGTGGCGCAGATGCAAAGCCAGATGGACCCGGTATACACGCCGGCGCGAAAAATTCACCTGTACCAc        <  1:335082‑M1/77‑1 (MQ=255)
                                                                             ggccgcacggtgccagccagcgGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACt       <  1:2214528‑M1/78‑1 (MQ=255)
                                                                             ggccgcacggtgccagccagcgGC‑‑‑CTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCg    <  1:746301‑M1/78‑1 (MQ=255)
                                                                             ggccgcacgatgccagccagcgGCGGCTTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACt       <  2:1247663‑M1/78‑1 (MQ=255)
                                                                             ggccgcacgatgccagccagcgGCGGCCTGACGGTGGCGCAGATGCAAAGCCAGATGGACCCGGTATACACGCCGGCGCGAAAAATTCACCTGTACCACt       <  2:2065708‑M1/78‑1 (MQ=255)
                                                                             ggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACt       <  1:2532860‑M1/78‑1 (MQ=255)
                                                                             ggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACt       <  1:1268405‑M1/78‑1 (MQ=255)
                                                                               ccgcacggtgccagccagcgGC‑‑‑CTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGAc  <  1:1164459‑M1/80‑1 (MQ=255)
                                                                               ccgcacgatgccagccagcgGCGGCCTGACGGTGGCGCAGATGCAAAGCCAGATGGACCCGGTATACACGCCGGCGCGAAAAATTCACCTGTACCACTGc     <  2:2529853‑M1/80‑1 (MQ=255)
                                                                                cgcacgatgccagccagcgGCGGCCTGACGGTGGCGCAGATGCAAAGCCAGATGGACCCGGTATACACGCCGGCGCGAAAAATTCACCTGTACCACTGCg    <  1:1428269‑M1/81‑1 (MQ=255)
                                                                                cgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCg    <  2:1652346‑M1/81‑1 (MQ=255)
                                                                                                   |                                                                                  
TGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGAC  >  NC_000913/3765448‑3765629

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.