New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | 3765547 = | 0 (0.000) | 23 (0.270) | 5/168 | NT | 32.2% | coding (3365/4134 nt) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
? | NC_000913 | 3767284 = | 97 (1.130) | pseudogene (64/945 nt) | rhsJ | Rhs‑family protein |
TGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGAC > NC_000913/3765448‑3765629 | gtcgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggtttttcatctgctccacggtcaggccgcacgatgccagccagcgg < 2:2301531‑M1/1‑1 (MQ=255) tcgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggtttttcatctgctccacggtcaggccgcacgatgccagccagcggc < 1:1383041‑M1/2‑1 (MQ=255) cgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggtttttcatctgctccacggtcaggccgcacgatgccagccagcggcg < 1:1046568‑M1/3‑1 (MQ=255) cgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggtttttcatctgctccacggtcaggccgcacgatgccagccagcggcg > 1:2368493‑M1/98‑100 (MQ=255) gcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggtttttcatctgctccacggtcaggccgcacgatgccagccagcggcgg > 2:1906187‑M1/97‑100 (MQ=255) gcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggtttttcatctgctccacggtcaggccgcacgatgccagccagcggcgg < 1:611753‑M1/4‑1 (MQ=255) cagtggtacaggtggatttttcgctctttcgtgtacaccgggtccatctggtttttcatctgctccacggtcaggccgcacgatgccagccagcggcggc < 2:424526‑M1/5‑1 (MQ=255) cagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggtttttcatctgctccacggtcaggccgcacgatgccagccagcggcggc > 1:46402‑M1/96‑100 (MQ=255) cagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatccggtttttcatctgctccacggtcaggccgcacgatgccagccagcggcggc < 2:2097582‑M1/5‑1 (MQ=255) ccgatcttcaggccgcacggtgccagccagcgGC‑‑‑CTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTg > 1:84790‑M1/33‑100 (MQ=255) acggtcaggccgcacggtgccagccagcgGC‑‑‑CTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTAc < 1:949324‑M1/71‑1 (MQ=255) cggtcaggccgcacggtgccagccagcgGC‑‑‑CTGAACGTGGAGCAGATGCAAAACCAGATGGACCGGGTGTACACGCCGGCGCGAAAAATCCACCTgtagc < 2:593858‑M1/72‑3 (MQ=255) cggtcaggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGt < 1:1675502‑M1/72‑1 (MQ=255) ngtcaggccgcacgatgccagccagcgGC‑‑‑CTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCa < 2:1996713‑M1/73‑1 (MQ=255) gtcaggccgcacgatgccagccagcgGC‑‑‑CTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCAc < 1:420775‑M1/74‑1 (MQ=255) tcaggccgcacggtgccagccagcgGC‑‑‑CTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAAtccacctgagatcgg < 2:84789‑M1/75‑8 (MQ=255) caggccgcacgatgccagccagcgGCGGCCTGACGGTGGCGCAGATGCAAAGCCAGATGGACCCGGTATACACGCCGGCGCGAAAAATTCACCTGTACCa < 2:1771826‑M1/76‑1 (MQ=255) caggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCa < 1:741288‑M1/76‑1 (MQ=255) caggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCa < 2:2527525‑M1/76‑1 (MQ=255) aggccgcacggtgccagccagcgGC‑‑‑CTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGc < 1:41606‑M1/77‑1 (MQ=255) aggccgcacgatgccagccagcgGCGGCCTGGCCGTG‑AGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGACAAATCCACCTGTACCACt < 2:2402612‑M1/77‑1 (MQ=255) aggccgcacgatgccagccagcgGCGGCCTGACGGTGGCGCAGATGCAAAGCCAGATGGACCCGGTATACACGCCGGCGCGAAAAATTCACCTGTACCAc < 1:335082‑M1/77‑1 (MQ=255) ggccgcacggtgccagccagcgGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACt < 1:2214528‑M1/78‑1 (MQ=255) ggccgcacggtgccagccagcgGC‑‑‑CTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCg < 1:746301‑M1/78‑1 (MQ=255) ggccgcacgatgccagccagcgGCGGCTTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACt < 2:1247663‑M1/78‑1 (MQ=255) ggccgcacgatgccagccagcgGCGGCCTGACGGTGGCGCAGATGCAAAGCCAGATGGACCCGGTATACACGCCGGCGCGAAAAATTCACCTGTACCACt < 2:2065708‑M1/78‑1 (MQ=255) ggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACt < 1:2532860‑M1/78‑1 (MQ=255) ggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACt < 1:1268405‑M1/78‑1 (MQ=255) ccgcacggtgccagccagcgGC‑‑‑CTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGAc < 1:1164459‑M1/80‑1 (MQ=255) ccgcacgatgccagccagcgGCGGCCTGACGGTGGCGCAGATGCAAAGCCAGATGGACCCGGTATACACGCCGGCGCGAAAAATTCACCTGTACCACTGc < 2:2529853‑M1/80‑1 (MQ=255) cgcacgatgccagccagcgGCGGCCTGACGGTGGCGCAGATGCAAAGCCAGATGGACCCGGTATACACGCCGGCGCGAAAAATTCACCTGTACCACTGCg < 1:1428269‑M1/81‑1 (MQ=255) cgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCg < 2:1652346‑M1/81‑1 (MQ=255) | TGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGAC > NC_000913/3765448‑3765629 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |