New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1040547 =NA (NA)8 (0.100) 7/158 NT NA noncoding (5/36 nt) REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 1040579 = NA (NA)intergenic (+42/‑38) cbdX/appA putative cytochrome bd‑II oxidase subunit/phosphoanhydride phosphorylase

TGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATCTGCAT  >  NC_000913/1040482‑1040677
                                                                                                 |                                                                                                  
tgtgTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaat                                                                                                  >  1:1863425/1‑100 (MQ=255)
tgtgTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaat                                                                                                  >  1:205748/1‑100 (MQ=255)
tgtgTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaat                                                                                                  >  2:2559179/1‑100 (MQ=255)
 gtgtTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatc                                                                                                 <  2:1633497/100‑1 (MQ=255)
 gtgtTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatc                                                                                                 <  1:1746920/100‑1 (MQ=255)
  tgtTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatca                                                                                                >  2:271565/1‑100 (MQ=255)
    ttCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatcaat                                                                                              <  1:322450/100‑1 (MQ=255)
    aatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatcaat                                                                                              >  2:740995‑M1/62‑100 (MQ=255)
      cGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCaataa                                                                                            >  2:1855037/1‑100 (MQ=255)
       gCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCaataat                                                                                           <  2:2513432/100‑1 (MQ=255)
        ctctCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATg                                                                                          >  2:2491452/1‑100 (MQ=255)
         tctcCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGt                                                                                         <  1:2311286/100‑1 (MQ=255)
         tctcCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGt                                                                                         >  1:2349707/1‑100 (MQ=255)
          ctcCACCCTTGTGTTGGTATGGCTGGACCAGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTc                                                                                        <  1:1126928/100‑1 (MQ=255)
           tcCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCa                                                                                       >  1:436376/1‑100 (MQ=255)
            ccACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAg                                                                                      >  2:307276/1‑100 (MQ=255)
            ccACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAg                                                                                      >  2:1366600/1‑100 (MQ=255)
               cccTTGTGTTGGTATGGCTGGAGGCGCGTCTGAAAAGTTAAGGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGa                                                                                     >  2:1360196/1‑98 (MQ=255)
               cccTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGTGCATTAGCATCGCATCAGGCAATCAATAATGTCAGata                                                                                   >  2:1391110/1‑100 (MQ=255)
               cccTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCCGata                                                                                   >  2:1845569/1‑100 (MQ=255)
               cccTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGata                                                                                   >  1:1906130/1‑100 (MQ=255)
                  ttGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGa                                                                                <  1:2128755/100‑1 (MQ=255)
                     tgtTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGaaaa                                                                             >  2:827033/1‑100 (MQ=255)
                     tgtTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGaaaa                                                                             >  1:230599/1‑100 (MQ=255)
                      gtTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAg                                                                            >  1:401420/1‑100 (MQ=255)
                        tGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCg                                                                          >  2:2429280/1‑100 (MQ=255)
                         ggTCTGGCTGGACCCGCGTCTGAAAAATTAACGAACGTAGGCCTGCTGCGGCGCATTAGCATAGCATCAGGCAATCAATAATGTCAGATATGAAAAGCgg                                                                         >  2:694702/1‑100 (MQ=255)
                          gTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGa                                                                        >  1:1472261/1‑100 (MQ=255)
                           tATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGaa                                                                       >  2:2138760/1‑100 (MQ=255)
                            gatatgtttccgcttttcatatctgacattattgattGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGaaa                                                                      <  1:989330‑M1/63‑1 (MQ=255)
                             tGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAAc                                                                     >  1:1646829/1‑100 (MQ=255)
                             tGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAAc                                                                     <  1:835749/100‑1 (MQ=255)
                                cTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACata                                                                  >  1:1252307/1‑100 (MQ=255)
                                  tttccgcttttcatatctgacattattgattgcctgatgcgatgctaatgcgccgcatcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATc                                                                <  1:989330‑M2/37‑1 (MQ=255)
                                  ggACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATc                                                                >  2:1425071/1‑100 (MQ=255)
                                  ggACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATc                                                                <  1:1312329/100‑1 (MQ=255)
                                    aCCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGa                                                              <  1:2268855/100‑1 (MQ=255)
                                     cccGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGAt                                                             <  1:1824335/100‑1 (MQ=255)
                                      ccGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATg                                                            <  1:2506307/100‑1 (MQ=255)
                                          gTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTGAGATATGAAAAGCGGAAACATATCGATGAAAg                                                        <  1:2429294/100‑1 (MQ=255)
                                          gTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAg                                                        <  1:1350156/100‑1 (MQ=255)
                                          gTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAg                                                        <  1:1132029/100‑1 (MQ=255)
                                            cTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCg                                                      >  1:1608654/1‑100 (MQ=255)
                                              gAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGa                                                     >  1:279740/1‑99 (MQ=255)
                                              gAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGAt                                                    <  1:1071733/100‑1 (MQ=255)
                                                aaaGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCt                                                  <  1:1819751/100‑1 (MQ=255)
                                                 aaGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGACAAGCGGAAACATATCGATGAAAGCGATCtt                                                 >  2:2335384/1‑100 (MQ=255)
                                                   gTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTaa                                               <  2:1285693/100‑1 (MQ=255)
                                                   gTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTaa                                               <  1:784443/100‑1 (MQ=255)
                                                   gTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTaa                                               >  1:665758/1‑100 (MQ=255)
                                                     tAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCCATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCGTAATc                                             >  2:163688/1‑100 (MQ=255)
                                                        cgaacgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATcc                                            >  2:1924360/1‑98 (MQ=255)
                                                        cgaacgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCa                                          >  2:903844/1‑100 (MQ=255)
                                                         gaacgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCa                                          >  2:2374149/1‑99 (MQ=255)
                                                         gaacgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCAt                                         >  2:1509978/1‑100 (MQ=255)
                                                          attgattgcctgatgcgatgctaatgcgccgcatcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCAtt                                        >  2:740995‑M2/40‑100 (MQ=255)
                                                            cgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCAtttt                                      <  2:1646817/100‑1 (MQ=255)
                                                                ggCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtc                                  >  2:550470/1‑100 (MQ=255)
                                                                ggCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtc                                  <  1:1388692/100‑1 (MQ=255)
                                                                 gcctgatgcgatgctaatgcgccgcatcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtct                                 >  1:159502‑M2/33‑100 (MQ=255)
                                                                  cctgatgcgatgctaatgcgccgcatcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtctc                                >  1:476049‑M2/32‑100 (MQ=255)
                                                                  cctgatgcgatgctaatgcgccgcatcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtctc                                >  1:1001722‑M2/32‑100 (MQ=255)
                                                                  CCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtctc                                <  2:961565‑M1/100‑1 (MQ=255)
                                                                  CCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtctc                                <  2:240698‑M1/100‑1 (MQ=255)
                                                                  CCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtctc                                <  1:807895‑M1/100‑1 (MQ=255)
                                                                   ctgatgcgatgctaatgcgccgcatcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATctct                               >  1:227729‑M2/31‑100 (MQ=255)
                                                                    tgatgcgatgctaatgcgccgcatcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCtctt                              >  1:1119224‑M2/30‑100 (MQ=255)
                                                                     GATGCGGCAGAGTAGCATCGCATCAGGCAATCAATAATGTGAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCtcttc                             >  2:2555311‑M1/1‑100 (MQ=255)
                                                                      ATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCtcttct                            <  2:1518358‑M1/100‑1 (MQ=255)
                                                                       TGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTg                           >  1:553062‑M1/1‑100 (MQ=255)
                                                                       TGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTg                           >  2:1409745‑M1/1‑100 (MQ=255)
                                                                        GCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGa                          <  2:885342‑M1/100‑1 (MQ=255)
                                                                         CGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGAt                         <  2:950165‑M1/100‑1 (MQ=255)
                                                                            cgcATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTcc                      <  2:80103/100‑1 (MQ=255)
                                                                             gctaatgcgccgcatcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCg                     <  2:476045‑M2/80‑1 (MQ=255)
                                                                               aTTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGtt                   <  2:436372/100‑1 (MQ=255)
                                                                                  aGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAAc                <  2:2177988/100‑1 (MQ=255)
                                                                                   gcatcgcatcAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAAcc               <  1:1551844/100‑1 (MQ=255)
                                                                                      tcgcatcAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCg            <  2:2501980/100‑1 (MQ=255)
                                                                                       cgcatcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGc           <  1:1703363‑M2/90‑1 (MQ=255)
                                                                                        gcatcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCa          >  1:1199489‑M2/10‑100 (MQ=255)
                                                                                        gcatcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCa          >  2:1907333‑M2/10‑100 (MQ=255)
                                                                                        gcatcAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAAAGTTCATACTCCCCTTTTTCTCTCTTCTGATTCCGttcccctc             >  1:1754383/1‑91 (MQ=255)
                                                                                            caggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATCt      >  2:765507‑M2/6‑100 (MQ=255)
                                                                                             aggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGAGGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATCTg     <  1:1458450‑M2/96‑1 (MQ=255)
                                                                                              ggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATCTGc    >  1:1449722‑M2/4‑100 (MQ=255)
                                                                                              ggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATCTGc    >  2:2458929‑M2/4‑100 (MQ=255)
                                                                                               gcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATCTGCa   <  1:1568568‑M2/98‑1 (MQ=255)
                                                                                                cAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATCTGCAt  <  2:647224‑M2/99‑1 (MQ=255)
                                                                                                cAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATCTGCAt  >  2:1006737‑M2/2‑100 (MQ=255)
                                                                                                cAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCACATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATCTGCAt  >  2:1798764‑M2/2‑100 (MQ=255)
                                                                                                 |                                                                                                  
TGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATCTGCAT  >  NC_000913/1040482‑1040677

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.