| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1748833 | 54 (0.590) | 11 (0.130) | 7/160 | NT | 18.0% | coding (727/813 nt) | ydhT | FNR, Nar, NarP‑regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex |
| ? | NC_000913 | = 1748842 | 52 (0.630) | coding (718/813 nt) | ydhT | FNR, Nar, NarP‑regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex | |||||
GCTATCAGCACTCAACAAACTGATGCTGTTCATTAAGACGATAGCGGACTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTGAGTCGACCACGCCCGTGCTCACTACCGTTGAATTTTCACCGCTGGC > NC_000913/1748743‑1748941 | gCTATCAGCACTCAACAAACTGATGCTGTTCATTAAGACGATAGCGGACTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAActct > 2:1456075/1‑100 (MQ=255)gCTATCAGCACTCAACAAACTGATGCTGTTCATTAAGACGATAGCGGACTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAActct < 1:1588549/100‑1 (MQ=255) tATCAGCACTCAACAAACTGATGCTGTTCATTAAGACGATAGCGGACTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTtt < 1:397376‑M2/100‑3 (MQ=255) aTCAGCACTCAACAAACTGATGCTGTTCATTAAGACGATAGCGGACTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTttc < 2:518130‑M2/100‑4 (MQ=255) cAGCACTCAACAAACTGATGCTGTTCATTAAGACGATAGCGGACTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTttcgc < 2:2147785‑M2/100‑6 (MQ=255) aGCACTCAACAAACTGATGCTGTTCATTAAGACGATAGCGGACTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTttcgcc < 1:914971‑M2/100‑7 (MQ=255) gCACTCAACAAACTGATGCTGTTCATTAAGACGATAGCGGACTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTttcgccg > 1:960376‑M2/1‑93 (MQ=255) cACTCAACAAACTGATGCTGTTCATTAAGACGATAGCGGACTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTttcgccgt > 1:1154724‑M2/1‑92 (MQ=255) cTCAACAAACTGATGCTGTTCATTAAGACGATAGCGGACTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCa > 2:305665/1‑100 (MQ=255) cTCAACAAACTGATGCTGTTAATTAAGACGATAGCGGACTCCGGCTGGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTttcgccgtc < 2:1563251‑M2/99‑10 (MQ=255) caacaaACTGATGCTGTTCATTAAGACGATAGCGGACTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATg > 2:1213769/1‑100 (MQ=255) acaaACTGATGCTGTTCATTAAGACGATAGCGGACTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGat < 2:16387/100‑1 (MQ=255) acaaACTGATGCTGTTCATTAAGACGATAGCGGACTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGat > 1:1746905/1‑100 (MQ=255) caaACTGATGCTGTTCATTAAGACGATAGCGGACTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGTGAAGCGAACTCTTTCGCCGTCATGata > 1:1135389/1‑100 (MQ=255) aaaCTGATGCTGTTCATTAAGACGATAGCGGACTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGatat < 2:2110790/100‑1 (MQ=255) aaCTGATGCTGTTCATTAAGACGATAGCGGACTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGATGGCGAAGCGAACTCTTTCGCCGTCATGATATg < 1:2428976/100‑1 (MQ=255) cTGATGCTGTTCATTAAGACGATAGCGGACTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGATATGcc < 1:515800/100‑1 (MQ=255) cTGATGCTGTTCATTAAGACGATAGCGGACTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGATATGcc < 2:412741/100‑1 (MQ=255) tGATGCTGTTCATTAAGACGATAGCGGACTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTGTCGCCGTCATGATATGcc < 2:2180226/99‑1 (MQ=255) tGCTGTTCATTAAGACGATAGCGGACTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGATATGCCAGTg > 2:2412802/1‑100 (MQ=255) gCTGTTCATTAAGACGATAGCGGACTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGATATGCCAGTgc > 2:538847/1‑100 (MQ=255) ttCATTAAGACGATAGCGGACTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGATATGCCAGTgcggcg < 1:1314787/100‑1 (MQ=255) cATTAAGACGATAGCGGACTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGATATGCCAGTGCGGCGCt > 1:2158409/1‑100 (MQ=255) cATTAAGACGATAGCGGACTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGATATGCCAGTGCGGCGCt > 1:1279568/1‑100 (MQ=255) cATTAAGACGATAGCGGACTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGATATGCCAGTGCGGCGCt < 2:1353570/100‑1 (MQ=255) cATTAAGACGATAGCGGACTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGGCATGATATGCCAGTgcggcg > 1:2464400/1‑98 (MQ=255) aTTAAGACGATAGCGGACTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGATATGCCAGTGCGGCGCtt > 1:2289587/1‑100 (MQ=255) tAAGACGATAGCGGACTCCGGCTCGAATATTGTTTTCACCCTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGATATGCCAGTGCGGCGCTtcc > 1:1910055/1‑100 (MQ=255) gACGATAGCGGACTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGATATGCCAGTGCGGCGCTtcctcc < 1:1462068/100‑1 (MQ=255) cGATAGCGGGCTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTg < 1:1935227/100‑1 (MQ=255) cGATAGCGGACTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTg > 2:25227/1‑100 (MQ=255) gATAGCGGACTCCGGCTCGAATATTGTTTTCACCTGCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTgg < 1:2542883/100‑1 (MQ=255) gATAGCGGACTCCGGCGCGAATATTGTTTTCACCGTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTgg < 2:2395894/100‑1 (MQ=255) aTAGCGGACTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGc < 1:2147799/100‑1 (MQ=255) ctcTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCgaga < 1:397225/98‑1 (MQ=255) aCTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGaa < 2:1381152/100‑1 (MQ=255) cTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGaa > 2:397221/1‑99 (MQ=255) cTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGaa > 2:611089/1‑99 (MQ=255) ccGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGactaa > 1:1911100/1‑100 (MQ=255) gCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTg < 1:610522/100‑1 (MQ=255) cTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTGa > 1:467525/1‑100 (MQ=255) cTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTGa > 1:208426/1‑100 (MQ=255) tCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTGAg < 1:2210189/100‑1 (MQ=255) atTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTGAGTCGAcc > 2:535513/1‑100 (MQ=255) atTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTGAGTCGAcc < 2:1279560/100‑1 (MQ=255) ttGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTGAGTCGACCa < 1:1283980/100‑1 (MQ=255) ttGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTGACTCGACCa > 2:92158/1‑100 (MQ=255) tGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTGAGTCGACCAc > 1:372427/1‑100 (MQ=255) gTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTttcgccgtcgccattgaaggtgaaaacaatattcgagccggagtccgctatcgtcttaatgaac < 1:607842‑M2/100‑65 (MQ=255) tCACCTTCAGTGGCGACGGCGCAGCGAACTCTTTCGCCTTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTGAGTCGACCACGCCCg > 2:1272089/1‑100 (MQ=255) aCCTTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTGAGTCGACCACGCCCGTg < 2:320521/100‑1 (MQ=255) ccTTCAATGGCGACGGCGAAGCGAACTCTttcgccgtcgccattgaaggtgaaaacaatattcgagccggagtccgctatcgtcttaatgaacagcatca < 1:1243956‑M2/100‑72 (MQ=255) ccTTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTGAGTCGACCACGccc > 2:844743/1‑96 (MQ=255) ccTTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTGAGTCGACCACGCCCGTGc < 1:403105/100‑1 (MQ=255) ccTTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTGAGTCGACCACGCCCGTGc < 1:1208810/100‑1 (MQ=255) cTTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTGAGTCGACCACGCCCGTGCt < 2:700338/100‑1 (MQ=255) cTTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTGAGTCGACCACGCCCGTGCt > 1:2466726/1‑100 (MQ=255) ttCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTGAGTCGACCACGCCCGTGCTc > 1:1658747/1‑100 (MQ=255) tGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTGAGTCGACCACGCCCGTGCTCACTAc > 2:462864/1‑100 (MQ=255) ggCGACGGCGAAGCGAACTCTttcgccgtcgccattgaaggtgaaaacaatattcgagccggagtccgctatcgtcttaatgaacagcatcagtttgttg < 2:2510684‑M2/100‑80 (MQ=255) ggCGACGGCGAAGCGAACTCTttcgccgtcgccattgaaggtgaaaacaatattcgagccggagtccgctatcgtcttaatgaacagcatcagtttgttg < 1:752745‑M2/100‑80 (MQ=255) ggCGACGGCGAAGCGAACTCTttcgccgtcgccattgaaggtgaaaacaatattcgagccggagtccgctatcgtcttaatgaacagcatcagtttgttg < 1:942698‑M2/100‑80 (MQ=255) gCGACGGCGAAGCGAACTCTttcgccgtcgccattgaaggtgaaaacaatattcgagccggagtccgctatcgtcttaatgaacagcatcagtttgttga < 1:861374‑M2/100‑81 (MQ=255) cGACGGCGAAGCGAACTCTttcgccgtcgccattgaaggtgaaaacaatattcgagccggagtccgctatcgtcttaatgaacagcatcagtttgttgag < 2:1774317‑M2/100‑82 (MQ=255) cGACGGCGAAGCGAACTCTttcgccgtcgccattgaaggtgaaaacaatattcgagccggagtccgctatcgtcttaatgaacagcatcagtttgttgag < 1:150501‑M2/100‑82 (MQ=255) cGACGGCGAAGCGAACTCTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTGAGTCGACCACGCCCGTGCTCACTACCGt > 1:298217/1‑100 (MQ=255) gACGGCGAAGCGAACTCTttcgccgtcgccatttaaggtgaaaacaatattcgagccggcgtccgctatcgtcttaatgaacagcatcagtttgttgagt < 2:782570‑M2/100‑83 (MQ=255) gACGGCGAAGCGAACTCTttcgccgtcgccattgaaggtgaaaacaatattcgagccggagtccgctatcgtcttaatgaacagcatcagtttgttgagt < 2:1475614‑M2/100‑83 (MQ=255) aCGGCGAAGCGAACTCTttcgccgtcgccattgaaggtgaaaacaatattcgagccggagtccgctatcggcttaatgaacagcatcagtttgttgagt < 2:1415527‑M2/99‑83 (MQ=255) cgaagcgaaCTCTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTGAGTCGACCACGCCCGTGCTCACTACCGTTGAAtt > 1:101664/1‑100 (MQ=255) gaagcgaaCTCTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTGAGTCGACCACGCCCGTGTTCACTACCGTTGAAttt < 1:2416895/100‑1 (MQ=255) gatctaCTCTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTGAGTCGACCACGCCCGTGCTCACTACCGTTGAATTTTc < 2:616899/95‑1 (MQ=255) agcgaaCTCTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTGAGTCGACCACGCCCGTGCTCACTACCGTTGAATTTTc < 2:2219333/100‑1 (MQ=255) gcgaaCTCTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTGAGTCGACCACGCCCGTGCTCACTACCGTTGAATTTTCa < 1:157951/100‑1 (MQ=255) cgaaCTCTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTGAGTCGACCACGCCCGTGCTCACTACCGTTGAATTTTCa > 1:97889/1‑99 (MQ=255) gaaCTCTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTGAGTCGACCACGCCCGTGCTCACTACCGTTGAATTTTCAc > 1:248141/1‑99 (MQ=255) gaaCTCTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCCCCTGGCCCGAGAATAATTGAGTCGACCACGCCCGTGCTCACTACCGTTGAATTTTCAcc > 2:2082317/1‑100 (MQ=255) aCTCTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTGAGTCGACCACGCCCGTGCTCACTACCGTTGAATTTTCagatc > 1:616906/1‑96 (MQ=255) ctctTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTGAGTCGACCACGCCCGTGCTCACTACCGTTGAATTTTCACCGCt < 2:1310371/100‑1 (MQ=255) ctTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCGTGGCCCGAGAATAATTGAGTCGACCACGCCCGTGCTCACTACCGTTGAATTTTCACCGCTgg > 2:1365259/1‑100 (MQ=255) ctTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTGAGTCGACCACGCCCGTGCTCACTACCGTTGAATTTTCACCGc > 2:2416937/1‑97 (MQ=255) tttCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTGAGTCGACCACGCCCGTGCTCCCTACCGATGAATTTTCACCGCTCGc > 2:77939/1‑100 (MQ=255) tttCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTGAGTCGACCACGCCCGTGCTCACTACCGTTGAATTTTCACCGCTGGc > 1:1946568/1‑100 (MQ=255) | GCTATCAGCACTCAACAAACTGATGCTGTTCATTAAGACGATAGCGGACTCCGGCTCGAATATTGTTTTCACCTTCAATGGCGACGGCGAAGCGAACTCTTTCGCCGTCATGATATGCCAGTGCGGCGCTTCCTCCTGGCCCGAGAATAATTGAGTCGACCACGCCCGTGCTCACTACCGTTGAATTTTCACCGCTGGC > NC_000913/1748743‑1748941 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |