| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4040481 | NA (NA) | 61 (0.720) | 12/166 | NT | 100% | intergenic (+58/‑36) | rrlA/rrfA | 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon |
| ? | NC_000913 | = 4040505 | 0 (0.000) | intergenic (+82/‑12) | rrlA/rrfA | 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon | |||||
AGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTC > NC_000913/4040412‑4040604 | aGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGACCGCTTCTGCGTTCTGATttaatc > 2:1394541‑M2/1‑94 (MQ=255) aCCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGACCGCTTCTGCGTTCTGATttaatctgta > 2:415211‑M2/1‑87 (MQ=255) gagagaAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcatctctaattccgcctaaaca < 2:191253‑M2/100‑46 (MQ=255) gaagaTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacacctt < 1:2048547‑M2/100‑50 (MQ=255) cTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaagg < 2:408461‑M2/100‑63 (MQ=255) cAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcc < 2:2033558‑M2/100‑69 (MQ=255) cAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcc < 1:1769211‑M2/100‑69 (MQ=255) cAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcc < 1:1635076‑M2/100‑69 (MQ=255) cAGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagc < 1:731626‑M2/100‑69 (MQ=255) aGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcct < 1:288251‑M2/100‑70 (MQ=255) aGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcct < 2:713858‑M2/100‑70 (MQ=255) aGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcc < 2:162067‑M2/100‑70 (MQ=255) aGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcc < 1:2040358‑M2/100‑70 (MQ=255) aGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcc > 1:408465‑M2/1‑31 (MQ=255) aGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatctgctatcatccgccaaaacatcttcggcgttgtaaggttaagcc < 2:1649948‑M2/99‑69 (MQ=255) aGATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggatgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcc < 1:2138081‑M2/100‑70 (MQ=255) gATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctc < 1:2023200‑M2/100‑71 (MQ=255) gATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctc < 1:573151‑M2/100‑71 (MQ=255) gATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctc < 2:1875309‑M2/100‑71 (MQ=255) gATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctc < 1:222397‑M2/100‑71 (MQ=255) gATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcct < 1:1778325‑M2/100‑71 (MQ=255) gATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcct < 2:1510708‑M2/100‑71 (MQ=255) gATTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcct < 2:1817132‑M2/100‑71 (MQ=255) aTTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctca < 1:1092318‑M2/100‑72 (MQ=255) aTTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctc < 1:1096316‑M2/100‑72 (MQ=255) aTTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatacgccaaaacagcttcggcgttgtaaggttaagcctc < 1:1797159‑M2/100‑72 (MQ=255) aTTAAATCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctatcatccgccaaaacagcttcggcgttgtaaggttaagcct < 2:2169985‑M2/98‑70 (MQ=255) aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctcacgg < 2:856670‑M2/100‑75 (MQ=255) aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctcacgg < 2:2507240‑M2/100‑75 (MQ=255) aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacgg < 1:468681‑M2/100‑75 (MQ=255) aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcctcacg < 1:701298‑M2/100‑75 (MQ=255) aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacg < 1:1538935‑M2/100‑75 (MQ=255) aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacg < 2:2513139‑M2/100‑75 (MQ=255) aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcctctctcatacgccaaaacatcttcggcgttgtaatgtcaagcctccc < 2:1778964‑M2/98‑73 (MQ=255) aaaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcatctctcaatccgcgaaaacaccttcggcgttataaggttaagcctcacg < 2:630442‑M2/100‑75 (MQ=255) aaaTCAGAACGAAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctcacgg < 1:523512‑M2/100‑75 (MQ=255) tctcaGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacggt > 2:1988522‑M2/3‑25 (MQ=255) aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaattttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcctcacgg < 1:676589‑M2/100‑76 (MQ=255) aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacggt < 1:2168649‑M2/100‑76 (MQ=255) aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacggt < 1:1843842‑M2/100‑76 (MQ=255) aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacggt < 2:254095‑M2/100‑76 (MQ=255) aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacggt < 1:1119616‑M2/100‑76 (MQ=255) aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcctcacgg < 1:1396440‑M2/100‑76 (MQ=255) aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcctcacgg < 1:1642748‑M2/100‑76 (MQ=255) aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacgg < 1:144067‑M2/100‑76 (MQ=255) aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacgg < 1:2010674‑M2/100‑76 (MQ=255) aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacgg < 1:232600‑M2/100‑76 (MQ=255) aaTCAGAACGCAGAAGCGGTCTGATttaatctgtatcagactgaaaatcttctctcatccgccaaaacagtttcggcgttgtaaggttaagccccacga < 2:529801‑M2/99‑75 (MQ=255) aTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctcacggtt < 1:2305403‑M2/100‑77 (MQ=255) aTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacggtt < 1:239133‑M2/100‑77 (MQ=255) aTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacggtt < 1:899758‑M2/100‑77 (MQ=255) aTCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacagcttcggcgttgtaaggttaagcctcacggt < 1:1848558‑M2/100‑77 (MQ=255) tCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacggttc < 1:1376602‑M2/100‑78 (MQ=255) tCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacggttc < 1:1376727‑M2/100‑78 (MQ=255) tCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagctccggcgttgtaaggttaagcctcacggttc < 2:958193‑M2/100‑78 (MQ=255) tCAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggtt < 1:1198881‑M2/100‑78 (MQ=255) cAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacatcttcggcgttgtaaggttaagcctcacggttca < 2:605846‑M2/100‑79 (MQ=255) cAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacggttca < 2:767713‑M2/100‑79 (MQ=255) cAGAACGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacggtaga < 1:1988536‑M2/100‑79 (MQ=255) aaCGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcatccgccaaaacagcttcggcgttgtaaggttaagcctcacggttcatta > 1:2033572‑M2/1‑19 (MQ=255) aCGCAGAAGCGGTCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcatta < 2:1924142‑M2/100‑83 (MQ=255) tCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaagcaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagc > 2:602682‑M2/1‑6 (MQ=255) tCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagc > 1:1537649‑M2/1‑6 (MQ=255) tCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagc > 1:1010648‑M2/1‑6 (MQ=255) tCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagc > 2:1468743‑M2/1‑6 (MQ=255) tCTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagc < 1:854709‑M2/100‑95 (MQ=255) cTGATttaatctgtatcaggctgaaaatcttctctcagtccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagct > 2:666878‑M2/1‑5 (MQ=255) cTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagct < 2:16870‑M2/100‑96 (MQ=255) cTGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagct > 2:1781304‑M2/1‑5 (MQ=255) tGATttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctc < 1:454883‑M2/100‑97 (MQ=255) tGATttaatctgtatcaggctgaaaatcttctctcaatccgacaaaacaccttaggcgttgtaaggttaagccacacggttcattagtaccggttagct > 2:1261921‑M2/1‑4 (MQ=255) gATttaatctgtatcaggctgaaaatcttctctcaatccgccaacacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctca > 1:2173457‑M2/1‑3 (MQ=255) tttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctcaac > 1:2397992‑M2/1‑1 (MQ=255) tttaatctgtatcaggctgaaaatcttctctcaatccgccaaaacaccttcggcgttgtaaggttaagcctcacggttcattagtaccggttagctcaac < 2:1407175‑M2/100‑100 (MQ=255) | AGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTC > NC_000913/4040412‑4040604 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |