| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,470,558 | G→A | 100% | pseudogene (42/3497 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,470,558 | 0 | G | A | 97.5% | 259.9 / ‑2.2 | 79 | pseudogene (42/3497 nt) | ydbA | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| Reads supporting (aligned to +/- strand): ref base G (1/1); new base A (49/28); total (50/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.77e-01 | |||||||||||
CAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACACTGTTGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTGAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGTAAAGATCCGGCACCGTCTCCCATTGTTTTACTGGCTACTAACGGAG > NC_000913/1470461‑1470654 | cAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACACTGTTGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTaaa < 1:337040/100‑1 (MQ=255)cAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATAGACAGATTGAATCTACACTGTTGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTaaa > 2:1141011/1‑100 (MQ=255) cacCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACACTGTTGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATac < 2:769229/100‑1 (MQ=255) acCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACACTGTTGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATaca < 1:2004237/100‑1 (MQ=255) acCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACACTGTTGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATaca > 1:1682339/1‑100 (MQ=255) ccGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACACTGTTGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATacaa > 1:1303901/1‑100 (MQ=255) ccGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACACTGTTGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATacaa > 1:1525351/1‑100 (MQ=255) cGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACACTGTTGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATacaac < 1:585108/100‑1 (MQ=255) gAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACACTGTTGAAATTCAGAAGTTAGGTTTTACTTTTGTTACTGGTAAAAATacaaca > 1:960059/1‑100 (MQ=255) aaGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACACTGTTGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAgg < 1:1797216/100‑1 (MQ=255) gagaTAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACACTGTTGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGta > 2:1298183/1‑100 (MQ=255) tAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACACTGTTGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATaaa > 2:581079/1‑100 (MQ=255) aaTTGAAAGGGGTGTTGCATTGACAGATTGAATCTACACTGTTGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAAt > 2:2117087/1‑100 (MQ=255) aaTTGAAAGGGGTGTTGCATTGACAGATTGAATCTACACTGTTGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAAt > 1:2245665/1‑100 (MQ=255) aaaGGGGTGTTGCATTGACAGATTGAATCTACACTGTTGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTgg < 2:2453657/100‑1 (MQ=255) aaGGGGTGTTGCATTGACAGATTGAATCTACACTGTTGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGc < 2:251079/100‑1 (MQ=255) ggTGTTGCATTGACAGATTGAATCTACACTGTTGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGa > 1:1309068/1‑100 (MQ=255) gtTGCATTGACAGATTGAATCTACACTGTTGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGAtct > 1:1644120/1‑100 (MQ=255) gtTGCATTGACAGATTGAATCTACACTGTTGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGAtct > 1:948580/1‑100 (MQ=255) tGCATTGACAGATTGAATCTACACTGTTGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCg > 1:513787/1‑100 (MQ=255) tGCATTGACAGATTGAATCTACACTGTTGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCg < 1:2452353/100‑1 (MQ=255) gCATTGACAGGTTGAATCTACACTGTTGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAGATGCAACAGGTATAAATAGTGGCACGATCTCGt < 2:1686409/100‑1 (MQ=255) gCATTGACAGATTGAATCTACACTGTTGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGt > 1:2199115/1‑100 (MQ=255) gCATTGACAGATTGAACCTACACTGTTGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTGAAAATACAACAGGTATAAATAGTGGCACGATCTCGt > 2:262001/1‑100 (MQ=255) ttGACAGATTGAATCTACACTGTTGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGttat < 1:581086/100‑1 (MQ=255) gACAGATTGAATCTACACTGTTGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGttatta > 1:801059/1‑100 (MQ=255) gACAGATTAGATCTACACTGTTGAAATTCATAATTTACGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGttat < 2:1801040/98‑1 (MQ=255) cAGATTGAATCTACACTGTTGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACa > 1:259590/1‑100 (MQ=255) gATTGAATCTACACTGTTGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACaaa > 2:2061671/1‑100 (MQ=255) gATTGAATCTACACTGTTGAAATTAAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACaa > 2:300317/1‑99 (MQ=255) aTTGAATCTACACTGTTGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACaaaa > 2:2049573/1‑100 (MQ=255) ttGAATCTACACTGTTGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAAt < 2:269594/100‑1 (MQ=255) gAATCTACACTGTTGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATgg < 1:2215399/100‑1 (MQ=255) gAATCTACACTGTTGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATgg < 1:2307077/100‑1 (MQ=255) aaTCTACACTGTTGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGt > 2:1287396/1‑100 (MQ=255) aTCTACACTGTTGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGTa < 1:597174/100‑1 (MQ=255) tCTACACTGTTGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGTaa < 1:106791/100‑1 (MQ=255) cTACACTGTTGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGTaaa < 1:2235574/100‑1 (MQ=255) tACACTGTTGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGTAAAg > 2:2373466/1‑100 (MQ=255) tACACTGTTGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGTAAAg > 1:247857/1‑100 (MQ=255) acacTGTTGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGTAAAGa > 1:91775/1‑100 (MQ=255) acacTGTTGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAAAGGTAAAGa > 2:1125526/1‑100 (MQ=255) cTGTTGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGTAAAGATcc > 2:2006087/1‑100 (MQ=255) gTTGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGTAAAGATCCgg > 2:2256243/1‑100 (MQ=255) ttGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGTAAAGATCCGGc < 2:1781467/100‑1 (MQ=255) ttGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTAGCGCGAACTCGTTATTACAAAATGGTAAAGATCCGGc < 2:376913/100‑1 (MQ=255) tGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGTAAAGATCCGGCa > 1:69616/1‑100 (MQ=255) gAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGTAAAGATCCGGCAc < 1:873531/100‑1 (MQ=255) gAAATTCAGAATTTAGGTTTTGCTATTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTAAGTAGAAAATGGTAAAAAtttgacac > 2:2353480/1‑93 (MQ=255) aaTTCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGTAAAGATCCGGCACCg > 1:1674716/1‑100 (MQ=255) aTTCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGTAAAGATCCGGCACCGt > 1:480774/1‑100 (MQ=255) ttCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGTAAAGATCCGGCACCGtc > 1:750521/1‑100 (MQ=255) ttCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGTAAAGATCCGGCACCGtc > 1:2127059/1‑100 (MQ=255) tCAGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGTAAAGATCCGGCACCGtct < 1:2061685/100‑1 (MQ=255) aGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGTAAAGATCCGGCACCGTCTcc > 1:1223653/1‑100 (MQ=255) aGAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGTAAAGATCCGGCACCGTCTcc > 2:2212321/1‑100 (MQ=255) gAATTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGTAAAGATCCGGCACCGTCTccc > 1:1828063/1‑100 (MQ=255) aTTTAGGTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGTAAAGATCCGGCACCGTCTCCCAt > 1:203459/1‑100 (MQ=255) ggTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGTAAAGATCCGGCACCGTCTCCCATTGttt > 1:1142602/1‑100 (MQ=255) ggTTTTGCTTTTGTTACTGGCAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGTAAAGATCCGGCACCGTCTCCCATTGttt > 2:1561447/1‑100 (MQ=255) gTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGTAAAGATCCGGCACCGTCTCCCATTGtttt > 1:482700/1‑100 (MQ=255) gTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGTAAAGATCCGGCACCGTCTCCCATTGtttt > 2:1370670/1‑100 (MQ=255) gTTTTGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGTAAAGATCCGGCACCGTCTCCCATTGtttt < 1:2527756/100‑1 (MQ=255) ttGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGTAAAGATCCGGCACCGTCTCCCATTGTTTTACt < 1:1609551/100‑1 (MQ=255) tGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGTCACGATCTCGTTATTACAAAATGGTAAAGATCCGGCACCGTCTCCCATTGTTTTACTg < 2:106634/100‑1 (MQ=255) tGCTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGTAAAGATCCGGCACCGTCCCCCATTGTTTTACTg > 2:186798/1‑100 (MQ=255) cTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGTAAAGATCCGGCACCGTCTCCCATTGTTTTACTGGc > 1:1521070/1‑100 (MQ=255) cTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGTAAAGATCCGGCACCGTCTCCCATTGTTTTACTGGc > 1:1522169/1‑100 (MQ=255) cTTTTGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGTAAAGATCCGGCACCGTCTCCCATTGTTTTACTGGc < 1:423700/100‑1 (MQ=255) ttttGTTACTGGTGAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGTAAAGATCCGGCACCGTCTCCCATTGTTTTACTGGct < 1:262004/100‑1 (MQ=255) ttttGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGTAAAGATCCGGCACCGTCTCCCATTGTTTTACTGGct > 1:1981318/1‑100 (MQ=255) ttttGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGTAAAGATCCGGCACCGTCTCCCATTGTTTTACTGGct < 2:1748315/100‑1 (MQ=255) ttGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGTAAAGATCCGGCACCGTCTCCCATTGTTTTACTGGctac > 1:2503492/1‑100 (MQ=255) ttGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGTAAAGATCCGGCACCGTCTCCCATTGTTTTACTGGctac < 1:610624/100‑1 (MQ=255) ttGTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGTAAAGATCCGGCACCGTCTCCCATTGTTTTACTGGctac < 2:69615/100‑1 (MQ=255) gTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGTAAAGATCCGGCACCGTCTCCCATTGTTTTACTGGctacta < 1:2183824/100‑1 (MQ=255) gTTACTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGTAAAGATCCGGCACCGTCTCCCATTGTTTTACTGGctacta > 1:1005735/1‑100 (MQ=255) cTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGTAAAGATCCGGCACCGTCTCCCATTGTTTTACTGGCTACTAACgg > 1:1225234/1‑100 (MQ=255) cTGGTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGTAAAGATCCGGCACCGTCTCCCATTGTTTTACTGGCTACTAACgg > 1:2065313/1‑100 (MQ=255) ggTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGTAAAGATCCGGCACCGTCTCCCATTGTTTTACTGGCTACTAACggag > 1:599468/1‑100 (MQ=255) ggTAAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGTAAAGATCCGGCACCGTCTCCCATTGTTTTACTGGCTACTAACggag > 1:545031/1‑100 (MQ=255) | CAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACACTGTTGAAATTCAGAATTTAGGTTTTGCTTTTGTTACTGGTGAAAATACAACAGGTATAAATAGTGGCACGATCTCGTTATTACAAAATGGTAAAGATCCGGCACCGTCTCCCATTGTTTTACTGGCTACTAACGGAG > NC_000913/1470461‑1470654 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |