| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,547,395 | A→G | 100% | intergenic (‑226/‑6) | yddG ← / → fdnG | aromatic amino acid exporter/formate dehydrogenase‑N, alpha subunit, nitrate‑inducible |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,547,395 | 0 | A | G | 97.6% | 267.2 / ‑2.6 | 81 | intergenic (‑226/‑6) | yddG/fdnG | aromatic amino acid exporter/formate dehydrogenase‑N, alpha subunit, nitrate‑inducible |
| Reads supporting (aligned to +/- strand): ref base A (1/1); new base G (42/37); total (43/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.70e-01 | |||||||||||
TTTTGTGGCAAACAGATGTTCTTTTTGATTTCGCGCAAAAAGATTCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGAAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCGCGGGCGGTATGGCTGGAACAACAGTAGCGGCATTGGGCTTTGCCCCGAA > NC_000913/1547299‑1547486 | ctttGTGGCAAACAGATGTTCTTTTTGATTTCGCGCAAAAAGATTCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAg < 2:81153/99‑1 (MQ=255) tttGTGGCAAACAGATGTTCTTTTTGATTTCGCGCAAAAAGATTCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGc < 1:2097838/100‑1 (MQ=255) tttGTGGCAAACAGATGTTCTTTTTGATTTCGCGCAAAAAGATTCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGc < 2:369456/100‑1 (MQ=255) ttGTGGCAAACAGATGTTCTTTTTGATTTCGCGCAAAAAGATTCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAgag > 1:81154/1‑98 (MQ=255) ttGTGGCAAACAGATGTTCTTTTTAAAATAGAAAAAAAAGATTCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCa < 2:2177381/100‑1 (MQ=255) ttGTGGCAAACAGATGTTCTTTTTAAAAAAAAAAAAAAAGATTCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAg < 2:82355/98‑1 (MQ=255) ggCAAACAGATGTTCTTTTTGATTTCGCGCAAAAAGATTCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATgg > 1:1049402/1‑100 (MQ=255) ggCAAACAGATGTTCTTTTTGATTTCGCGCAAAAAGATTCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATgg > 1:986338/1‑100 (MQ=255) ggCAAACAGATGTTCTTTTTGATTTCGCGCAAAAAGATTCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATgg > 1:697943/1‑100 (MQ=255) ggCAAACAGATGTTCTTTTTGATTTCGCGCAAAAAGATTCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATgg < 1:1351239/100‑1 (MQ=255) ggCAAACAGATGTTCTTTTTGATTTCGCGCAAAAAGAGTCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATgg > 2:1372244/1‑100 (MQ=255) cAAACAGATGTTCTTTTTGATTTCGCGCAAAAAGATTCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGAc > 2:428552/1‑100 (MQ=255) aaaCAGATGTTCTTTTTGATTTCGCGCAAAAAGATTCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACg < 2:64067/100‑1 (MQ=255) aaCAGATGTTCTTTTTGATTTCGCGCAAAAAGATTCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGt > 1:2172229/1‑100 (MQ=255) cAGATGTTCTTTTTGATTTCGCGCAAAAAGATTCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCa > 2:2118929/1‑100 (MQ=255) aTGTTCTTTTTGATTTCGCGCAAAAAGATTCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTc > 1:377725/1‑100 (MQ=255) gTTCTTTTTGATTTCGCGCAAAAAGATTCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGc > 1:838473/1‑100 (MQ=255) gTTCTTTTTGATTTCGCGCAAAAAGATTCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGc < 1:2551900/100‑1 (MQ=255) tCTTTTTGATTTCGCGCAAAAAGATTCAGATTTATACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAg > 2:1684420/1‑100 (MQ=255) tCTTTTTGATTTCGCGCAAAAAGATTCAGAATTTTACTGTTAGTTTCCTCTCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAg < 2:2091866/100‑1 (MQ=255) tCTTTTTGATTTCGCGCAAAAAGATTCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAg < 1:989245/100‑1 (MQ=255) tCTTTTTGATTTCGCGCAAAAAGATTCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAg > 1:1153527/1‑100 (MQ=255) tttgtGATTTCGCGCAAAAAGATTCAGACTTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAg < 2:1856078/98‑1 (MQ=255) ttttGATTTCGCGCAAAAAGATTCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGAAAGCAATGGACGTCAGTCGCAGACa > 1:373988/1‑100 (MQ=255) gATTTCGCGCACAAAGATTCAGAATTTTACTGTTCGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAAttt < 1:757213/100‑1 (MQ=255) gATTTCGCGCAAAAAGATTCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAAttt > 1:1133560/1‑100 (MQ=255) aTTTCGCGCAAAAAGATTCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAAtttt > 1:1831079/1‑100 (MQ=255) tttCGCGCAAAAAGATTCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAAttttt > 1:437292/1‑100 (MQ=255) ttCGCGCAAAAAGATTCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAAtttttt < 2:1196965/100‑1 (MQ=255) ttCGCGCAAAAAGATTCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAAtttttt < 1:516851/100‑1 (MQ=255) tCGCGCAAAAAGATTCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTa < 1:1255581/100‑1 (MQ=255) tCGCGCAAAAAGATTCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCGGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTa < 2:436912/100‑1 (MQ=255) cgcgCAAAAAGATTCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTaa > 2:2082493/1‑100 (MQ=255) cgcAAAAAGATTCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTaaaa < 1:35739/100‑1 (MQ=255) gcAAAAAGATTCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAAt > 1:1195756/1‑100 (MQ=255) gcAAAAAGATTCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAAt < 1:1189358/100‑1 (MQ=255) gcAAAAAGATTCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAAt > 2:2468446/1‑100 (MQ=255) cAAAAAGATTCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAAttttttttattt > 2:1758841/1‑94 (MQ=255) cAAAAAGATTCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATc < 1:528456/100‑1 (MQ=255) cAAAAAGATTCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATc < 1:789254/100‑1 (MQ=255) gATTCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGcgcg < 1:77807/100‑1 (MQ=255) ttCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGGAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCgcggg > 1:454239/1‑100 (MQ=255) tCATAATTTTACTGTTAGTTTCGTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCgcgggc < 2:883333/100‑1 (MQ=255) tCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCgcgggc > 1:1311086/1‑100 (MQ=255) cAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCgcgggcg < 2:1535368/100‑1 (MQ=255) cAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCgcgggcg > 1:451680/1‑100 (MQ=255) cAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCgcgggcg > 1:228317/1‑100 (MQ=255) aGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCgcgggcgg < 1:265499/100‑1 (MQ=255) aaTTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCGCGGGCGGTa < 1:1359184/100‑1 (MQ=255) aTTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCGCGGGCGGTAt > 2:310194/1‑100 (MQ=255) aTTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCGCGGGCGGTAt < 1:2234012/100‑1 (MQ=255) tttACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCGCGGGCGGTATgg < 1:2121093/100‑1 (MQ=255) ttACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCGCGGGCGGTATGGc < 1:157358/100‑1 (MQ=255) cTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCGCGGGCGGTATGGCTgg > 2:1297101/1‑100 (MQ=255) ttAGTTTCCTCGCGCAGTAATACACCTGCAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCGCGGGCGGTATGGCTGGaac > 2:307412/1‑100 (MQ=255) tAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCGCGGGCGGTATGGCTGGaaca > 1:2249349/1‑100 (MQ=255) gTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCGCGGGCGGTATGGCTGGaacaac > 1:1477676/1‑100 (MQ=255) gTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGAAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCGCGGGCGGTATGGCTGGaacaac < 2:2500154/100‑1 (MQ=255) tttCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCGCGGGCGGTATGGCTGGAacaaca < 1:410844/100‑1 (MQ=255) tttCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCGCGGGCGGTATGGCTGGAacaaca < 2:1275366/100‑1 (MQ=255) tttCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCGCGGGCGGTATGGCTGGAacaaca < 1:1120695/100‑1 (MQ=255) tCCTCGCGCAGTAATACCCCGGAAAAGAGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCGCGGGCGGTATGGCTGGAACAACAGt > 2:213507/1‑100 (MQ=255) ccgcgagcAGTAATACCCCCGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAATTGTTTAAAATCGGCGCGGGCGGTATGGCTGGAACAACAg < 2:1155841/92‑1 (MQ=255) ccTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCGCGGGCGGTATGGCTGGAACAACAGTa > 2:1328867/1‑100 (MQ=255) cTCGCGCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCGCGGGCGGTATGGCTGGAACAACAGTAg > 1:2322520/1‑100 (MQ=255) cgcgCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCGCGGGCGGTATGGCTGGAACAACAGTAGCg > 1:987455/1‑100 (MQ=255) cgcgCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCGCGGGCGGTATGGCTGGAACAACAGTAGCg > 2:583535/1‑100 (MQ=255) cgcgCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCGCGGGCGGTATGGCTGGAACAACAGTAGCg < 2:2386369/100‑1 (MQ=255) cgcgCAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCGCGGGCGGTATGGCTGGAACAACAGTAGCg < 1:943545/100‑1 (MQ=255) gcgcAGTAATACCCCTGAAAAAAGAAGGAAGCAATGGACGTCAGTCGCAGACAATATTTTAAAATCTGCGCGGGCGGTATGGCTGGAAAAACAGTAGCgg > 2:830441/1‑100 (MQ=255) gcAGTAATACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCGCGGGCGGTATGGCTGGAACAACAGTAGCGGCa > 1:905904/1‑100 (MQ=255) aTACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCGCGGGCGGGATGGCTGGAACAACAGTAGCGGCATTGGGc > 2:622186/1‑100 (MQ=255) tACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCGCGGGCGGTATGGCTGGAACAACAGTAGCGGCATTGGGCt > 2:2075044/1‑100 (MQ=255) tACCCCTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCGCGGGCGGTATGGCTGGAACAACAGTAGCGGCATTGGGCt < 1:1079291/100‑1 (MQ=255) ccccTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCGCGGGCGGTATGGCTGGCACAACAGTAGCGGCATTGGGCttt > 1:2044423/1‑100 (MQ=255) ccccTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCGCGGGCGGTATGGCTGGAACAACAGTAGCGGCATTGGGCttt > 2:65668/1‑100 (MQ=255) cccTGAAAAAAGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCGCGGGCGGTATGGCTGGAACAACAGTAGCGGCATTGGGCTTTg > 2:797768/1‑100 (MQ=255) aaaaaaGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCGCGGGCGGTATGGCTGGAACAACAGTAGCGGCATTGGGCTTTGccc > 2:478471/1‑98 (MQ=255) aaaaaaGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCGCGGGCGGTATGGCTGGAACAACAGTAGCGGCATTGGGCTTTGCCCCg < 2:1195748/100‑1 (MQ=255) aaaaaGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCGCGGGCGGTATGGCTGGAACAACAGTAGCGGCATTGGGCTTTGCCCCGa < 1:666754/100‑1 (MQ=255) aaaaGAGGGAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCGCGGGCGGTATGGCTGGAACAACAGTAGCGGCATTGGGCTTTGCCCCGaa > 1:810459/1‑100 (MQ=255) | TTTTGTGGCAAACAGATGTTCTTTTTGATTTCGCGCAAAAAGATTCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGAAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCGCGGGCGGTATGGCTGGAACAACAGTAGCGGCATTGGGCTTTGCCCCGAA > NC_000913/1547299‑1547486 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |