| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,737,314 | C→A | 15.3% | intergenic (‑24/+142) | ydhP ← / ← ynhF | putative MFS transporter, inner membrane protein/stress response membrane |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,737,314 | 0 | C | A | 15.3% | 221.0 / 22.3 | 82 | intergenic (‑24/+142) | ydhP/ynhF | putative MFS transporter, inner membrane protein/stress response membrane |
| Reads supporting (aligned to +/- strand): ref base C (36/33); new base A (7/6); total (43/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCATTGGCGAGAACTCCGTTGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAA > NC_000913/1737215‑1737411 | ccATTGGCGAGAACTCCGTTGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTc > 1:358609/1‑100 (MQ=255)ccATTGGCGAGAACTCCGTTGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTc > 1:1305825/1‑100 (MQ=255) ttGGCGAGAACTCCGTTGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCAtt > 1:1821633/1‑100 (MQ=255) tGGCGAGAACTCCGTTGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTa < 1:426785/100‑1 (MQ=255) cGAGAACTCCGTTGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTAcgc > 1:1054296/1‑100 (MQ=255) gaACTCCGTTGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGat < 1:1017125/100‑1 (MQ=255) gaACTCCGTTGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGat < 1:1468853/100‑1 (MQ=255) aaCTCCGTTGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGat < 2:264910/99‑1 (MQ=255) cTCCGTTGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATAtt > 2:1873333/1‑100 (MQ=255) cTCCGTTGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATAtt > 1:1316309/1‑100 (MQ=255) cTCCGTTGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTAATGACGCGaagag < 1:756633/100‑5 (MQ=255) tCCGTTTTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTAATGACGCGaagagg < 1:2136243/100‑6 (MQ=255) tCCGTTGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTAATGACGCGaagagg < 1:1147656/100‑6 (MQ=255) gtgTTGTCCCGATAGCAAACGCTCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCGTCGCGTAATGACGCGaaga < 2:2007386/95‑4 (MQ=255) ccGTTGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCa < 1:2460529/100‑1 (MQ=255) ccGTTGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTAATGACGCGaagagg < 2:2403113/99‑6 (MQ=255) ttGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTa < 1:1985444/100‑1 (MQ=255) tCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAg > 2:1420239/1‑100 (MQ=255) tCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCCTCGCGTCATTACGCGATATTCATTAAAg < 2:2474200/100‑1 (MQ=255) cGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTgg < 2:1101236/100‑1 (MQ=255) gATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGc < 1:1846268/100‑1 (MQ=255) aTACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCg < 2:2206740/100‑1 (MQ=255) ccAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGaaa > 1:437715/1‑100 (MQ=255) ccAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGaaa > 2:2286771/1‑100 (MQ=255) cAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAg > 1:1494543/1‑100 (MQ=255) aaaCGCGCCAATCGCTAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGc < 2:442887/100‑1 (MQ=255) aaaCGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGc > 1:943798/1‑100 (MQ=255) aCGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCAt < 1:1705222/100‑1 (MQ=255) cgcgCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATg > 2:529061/1‑100 (MQ=255) cgcCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGAc > 1:151057/1‑100 (MQ=255) ccAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAg < 1:144157/100‑1 (MQ=255) ccAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAg > 2:314454/1‑100 (MQ=255) cAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGc < 2:1642017/100‑1 (MQ=255) cAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGc > 1:1632106/1‑100 (MQ=255) aaTCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCa > 2:777557/1‑100 (MQ=255) tCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAAt < 1:2162820/100‑1 (MQ=255) cgccagcgccagCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATc < 2:274366/100‑1 (MQ=255) gccagcgccagcAACGGATAGTTAATTTTCATGCCTTCTCTCCACCTCTTCGCGTAATTACGAGAGATTCATTAAAGCGGCGAAAGCATGCCAGCAATca > 2:1988417/1‑100 (MQ=255) gccagcgccagcAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATca > 2:1309555/1‑100 (MQ=255) gccagcgccagcAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATca > 2:940949/1‑100 (MQ=255) ccagcgccagtAACGGATAGGTAATACTCATGCCTTATCTCAAACCATTCACTCCATTTCGCGATATTCATCAAAATGGCGAAAGCATGACAGCaacaa > 2:1182481/1‑96 (MQ=255) agcgccagcAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATaaca > 2:2530951/1‑99 (MQ=255) agcgccagcAACGGATAGTTAATTTTCATGCCTAATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACaa > 2:1543249/1‑100 (MQ=255) gccagcAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACaaaaa < 1:1069462/100‑1 (MQ=255) ccagcAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACaaaaaa < 1:1614113/100‑1 (MQ=255) ccagcAACGGATAGTTAATTTTCATGCCTTATCCCCACCTCTTCGCGTCATTACGCGATATTCATTAACGTGGCGACAGCATGACAGCAATCACaaaaaa > 2:1693820/1‑100 (MQ=255) agcAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAAt < 2:2165484/100‑1 (MQ=255) cAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGa > 1:2197884/1‑100 (MQ=255) aaCGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGaa < 1:1281016/100‑1 (MQ=255) aaCGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGaa < 1:1179700/100‑1 (MQ=255) tAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAAc < 2:1054288/100‑1 (MQ=255) tAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAAc > 1:1384456/1‑100 (MQ=255) gTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACaa > 2:2495454/1‑100 (MQ=255) tAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAACATGACAGCAATCACAAAAAAATGAAAATAACaaaa > 1:1796665/1‑100 (MQ=255) aaTTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACaaaaa > 2:119244/1‑100 (MQ=255) aTTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAag < 1:1072436/100‑1 (MQ=255) cATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGaaa > 2:1265496/1‑100 (MQ=255) cATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGaaa < 1:1556396/100‑1 (MQ=255) aTGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGaaaa > 2:2470556/1‑100 (MQ=255) tGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAac > 1:1929326/1‑100 (MQ=255) ccTTATCTCCACCTCTTCGCGTCATTACGCGATTTTCATTAAAGTGGCGAAAGCTTGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAaca > 2:1017524/1‑99 (MQ=255) cTTATCTCCACCTGTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAAACACAAAAAAATGAAAATAACaaaaaaaacaaaga > 2:1588300/1‑89 (MQ=255) cTTATCTACACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGAAAACACAAAAAAATGAAAATAACAAAAaga < 2:2442462/91‑1 (MQ=255) aTCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACtttt < 1:2537997/100‑1 (MQ=255) tctcCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTg < 1:793026/100‑1 (MQ=255) ctcCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGc < 1:795470/100‑1 (MQ=255) tcCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGcc > 1:1494641/1‑100 (MQ=255) taatgaatatCGCGTAATGACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGcc > 1:2193708/10‑100 (MQ=255) ccACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCa < 1:1744600/100‑1 (MQ=255) aatgaatatCGCGTAATGACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCa > 2:355862/9‑100 (MQ=255) atgaatatCGCGTAATGACGCGATATTCATTAAAGTGGCGAAAGTATGACAGCACTCACAAAAAAATGAAAATCACAAAAAGAGAAAACACTTTTGCCAt > 1:591656/8‑100 (MQ=255) tgaatatCGCGTAATGACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCAtt > 1:1055502/7‑100 (MQ=255) gaatatCGCGTAATGACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCAttt > 1:301717/6‑100 (MQ=255) ccTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCAttt > 1:1478451/1‑100 (MQ=255) ccTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCAttt > 2:398360/1‑100 (MQ=255) ctctTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCAtttt > 1:590763/1‑100 (MQ=255) ctTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTg > 2:859752/1‑99 (MQ=255) ctTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGc < 1:777564/100‑1 (MQ=255) ttCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCt < 2:1214312/100‑1 (MQ=255) ttCGCGTCATAACGCGATATTCATTAAAGTGGCGAAAGCATAAAAAAAAAAAAAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCAttt < 1:1134330/96‑1 (MQ=255) cgcgTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCt < 2:1869812/98‑1 (MQ=255) cgcgTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAAAACTTTTGCCATTTTGCTaa > 2:1735075/1‑100 (MQ=255) cgcgTAATGACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAAACAAAAGAGAAAACACTTTTGCCATTTTGCTaa > 2:893695/1‑100 (MQ=255) cgTAATTACGCGTTATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCt < 2:1494206/96‑1 (MQ=255) cATTAAGAGATATTCATTAAAGGCGCGCAAGCATTACAAAAAAAAAAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTaacaa < 2:247408/98‑1 (MQ=255) | CCATTGGCGAGAACTCCGTTGTCCCGATACCAAACGCGCCAATCGCCAGCGCCAGCAACGGATAGTTAATTTTCATGCCTTATCTCCACCTCTTCGCGTCATTACGCGATATTCATTAAAGTGGCGAAAGCATGACAGCAATCACAAAAAAATGAAAATAACAAAAAGAGAAAACACTTTTGCCATTTTGCTAACAA > NC_000913/1737215‑1737411 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |