BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_000913	36,231	T→C	100%	intergenic (‑69/+40)	caiD ← / ← caiC	carnitinyl‑CoA dehydratase/putative crotonobetaine/carnitine‑CoA ligase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	36,231	0	T	C	100.0%	361.4 / ‑6.7	105	intergenic (‑69/+40)	caiD/caiC	carnitinyl‑CoA dehydratase/putative crotonobetaine/carnitine‑CoA ligase
Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (48/56); total (49/56)

Only 100 of 108 total aligned reads displayed.

TTGCGGGTCAGATGTAATGATTCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGTGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAGCAATTACGTGGCAGATCTTTTCT  >  NC_000913/36134‑36327

ttGCGGGTCAGATGTAATGATTCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAgcgt                                                                                                <  1:2327666/100‑1 (MQ=255)

 tGCGGGTCAGATGTAATGATTCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGcgtg                                                                                               <  1:368915/100‑1 (MQ=255)

 tGCGGGTCAGATGTAATGATTCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGcgtg                                                                                               <  2:1880221/100‑1 (MQ=255)

  gCGGGTCAGATGTAATGATTCACTCATTCCGTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGa                                                                                              <  2:101632/100‑1 (MQ=255)

      gTCAGATGTAATGATTCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGattat                                                                                          >  2:1643744/1‑100 (MQ=255)

       tCAGATGTAATGATTCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGattatt                                                                                         <  2:1959313/100‑1 (MQ=255)

        cAGATGTAATGATTCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGAttatta                                                                                        >  1:1554785/1‑100 (MQ=255)

         aGATGTAATGATTCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAg                                                                                       <  2:1322362/100‑1 (MQ=255)

         aGATGTAATGATTCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAg                                                                                       <  1:2006424/100‑1 (MQ=255)

          gATGTAATGATTCACTCATTGCTTTTCGCAATTTTTGGTTTTTCATGCACGAAAAAAAAAAAAAAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGc                                                                                      <  2:411516/100‑1 (MQ=255)

          gATGTAATGATTCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGattatt                                                                                         >  2:2213813/1‑97 (MQ=255)

           aTGTAATGATTCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGcn                                                                                     <  2:688475/100‑2 (MQ=255)

           aTGTAATGATTCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCt                                                                                     <  2:1675597/100‑1 (MQ=255)

            tGTAATGATTCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTg                                                                                    <  1:437464/100‑1 (MQ=255)

             gTAATGATTCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTgg                                                                                   >  2:647539/1‑100 (MQ=255)

              tAATGATTCACTCATTCCTTTTCTCCATTTTTTTTTTTTTTTTTACTACAACATCCCTTCAAAAAATGCTTATTGTTTTAGAGTGTGTTTATTAGCt                                                                                     >  2:87249/1‑97 (MQ=255)

              tAATGATTCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACAGCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGc                                                                                  <  1:725743/100‑1 (MQ=255)

                aTGATTCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAg                                                                                <  1:310135/100‑1 (MQ=255)

                 tGATTCACTCATTCCTTTTCTCCATTTTTTTTTTTTTTTTTACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGTCAgg                                                                               >  2:1750056/1‑100 (MQ=255)

                  gATTCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAggg                                                                              <  1:2326478/100‑1 (MQ=255)

                  gATTCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAggg                                                                              >  2:1031227/1‑100 (MQ=255)

                   aTTCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGt                                                                             <  1:1977131/100‑1 (MQ=255)

                   aTTCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGt                                                                             <  2:508185/100‑1 (MQ=255)

                   aTTCACTCATTCCTTTTCTCCATTGTTGCTTTTTCAGGGACGACAACAACCCTACAAAAAATGCATATTGTTTTAGAGCGTGATTCTTAGCTGGCAGGGt                                                                             <  2:508098/100‑1 (MQ=255)

                    ttCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGCTTATTAGCTGGCAGGGTa                                                                            >  1:934756/1‑100 (MQ=255)

                    ttCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTa                                                                            <  2:1686549/100‑1 (MQ=255)

                     tCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAg                                                                           >  1:400073/1‑100 (MQ=255)

                     tCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAg                                                                           >  2:660516/1‑100 (MQ=255)

                     tCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAg                                                                           <  2:1282692/100‑1 (MQ=255)

                      cACTCATTCCTTTTCTCCATTTTTATTTTTTCAAGGACGACAACATCCCTCCAAAAAATGCCTATTTTTTTAGCCCGTTATTATTATCCATCAGGGTa                                                                            >  2:1031666/1‑98 (MQ=255)

                       aCTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGtt                                                                         <  1:2071927/100‑1 (MQ=255)

                       aCTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGtt                                                                         >  2:849512/1‑100 (MQ=255)

                        cTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGtt                                                                         >  2:594489/1‑99 (MQ=255)

                         tCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAgggaacta                                                                         >  2:1605891/1‑93 (MQ=255)

                            ttCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCctg                                                                    <  2:100810/100‑1 (MQ=255)

                               gatctctcCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCctgctg                                                                 <  1:1202511/96‑1 (MQ=255)

                                ttttCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGAACTACCctgccag                                                                <  2:565648/100‑4 (MQ=255)

                                 tttacaaaTTTTTGCTTTTTCAGGGAAAACAAAATAAAAGAAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGAACTACCctgcca                                                                 <  2:210568/91‑3 (MQ=255)

                                 tttCTCCATTTTTGCTTGGTCCGGGACAACAACATCCCTGCAAAAAATGCATATTGTTTTATAGCGTGATTAGTAGCTGGCAGGGAACTACCctgccag                                                                <  1:731121/99‑4 (MQ=255)

                                 ttcctcCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGtt                                                               <  1:884751/97‑1 (MQ=255)

                                  ttCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGttt                                                              <  1:79241/100‑1 (MQ=255)

                                   tctcCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTc                                                             <  1:1091517/100‑1 (MQ=255)

                                   tctcCATTTTTACATTTTAAGGGACGACAACATCACTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGGTGGCAGGGGAGTTCCCTGCTtttt                                                              >  2:1491098/1‑99 (MQ=255)

                                   cttcCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTc                                                             <  1:2170954/98‑1 (MQ=255)

                                    ctcCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCctgctgagatc                                                            >  2:1202503/1‑95 (MQ=255)

                                    ctcCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCa                                                            <  1:208576/100‑1 (MQ=255)

                                     tcCATTTTTGCTTTTTGAGGGACGACAACATCCCTGCAAAAAATGCATATCGTTTTAGTACGAGGTTGTTAGCTGCCAGGGTAGTTCCCTTCTGTTTCa                                                            >  2:1436503/1‑99 (MQ=255)

                                     tcCATTTTTGCTTTTTCATGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCat                                                           <  2:563927/100‑1 (MQ=255)

                                     tcCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCat                                                           >  1:65954/1‑100 (MQ=255)

                                     tcCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCag                                                           >  2:2170939/1‑99 (MQ=255)

                                      ccATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCatt                                                          <  1:1460798/100‑1 (MQ=255)

                                         tctttGCGTTGTCAGGGACTACAAAATAAAAAAAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCattta                                                        <  2:71571/97‑1 (MQ=255)

                                          ttttGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCatttatt                                                      <  1:594496/100‑1 (MQ=255)

                                           tttGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGTTTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCatttattt                                                     >  1:2522283/1‑100 (MQ=255)

                                             tGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCa                                                   <  1:1968406/100‑1 (MQ=255)

                                                tttttCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGAt                                                >  2:741432/1‑100 (MQ=255)

                                                 ttttCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGAtt                                               >  1:234777/1‑100 (MQ=255)

                                                 ttttCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGAtt                                               >  1:549894/1‑100 (MQ=255)

                                                 ttttCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGAtt                                               >  2:1259936/1‑100 (MQ=255)

                                                     cAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGAttcttt                                           <  1:789333/100‑1 (MQ=255)

                                                     cAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGAttcttt                                           >  2:694035/1‑100 (MQ=255)

                                                      aGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTTATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGAttctttc                                          <  2:1631262/100‑1 (MQ=255)

                                                      aGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGAttctttc                                          >  2:71203/1‑100 (MQ=255)

                                                        ggACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGAttctttct                                         >  1:1387307/1‑99 (MQ=255)

                                                        ggACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTa                                        <  1:854001/100‑1 (MQ=255)

                                                         gacgacAACATCCCTGCAAAAAATGCATAGTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTaa                                       <  2:848346/100‑1 (MQ=255)

                                                          acgacAACATCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAat                                      <  1:1457930/100‑1 (MQ=255)

                                                             acaacaTCCCTGCAAAAAATGCATATTGTTTTAGGGCGTGCTTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAatt                                     <  2:2165868/98‑1 (MQ=255)

                                                             acaacaTCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAattat                                   <  1:1303274/100‑1 (MQ=255)

                                                             acaacaTCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAattat                                   >  1:1790179/1‑100 (MQ=255)

                                                              caacaTCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAattatt                                  >  2:819878/1‑100 (MQ=255)

                                                                 caTCCCTGCAAAAAATGCATATTGTTTTAGAGCGTTATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTc                               <  2:2316105/100‑1 (MQ=255)

                                                                 caTCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTAtttt                                >  2:329290/1‑99 (MQ=255)

                                                                 caTCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTc                               >  1:333552/1‑100 (MQ=255)

                                                                 caTCCCTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTc                               >  1:332656/1‑100 (MQ=255)

                                                                     ccTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCg                           <  2:1721885/100‑1 (MQ=255)

                                                                      cTGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGa                          <  1:1643756/100‑1 (MQ=255)

                                                                       tGCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAg                         >  1:2216351/1‑100 (MQ=255)

                                                                        gCAAAAAATGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAGc                        >  1:1906/1‑100 (MQ=255)

                                                                        gCAAAAAATGCATATTGTTTTAGAGCGAGATGGTTAGCTGGCAGGGTAGTTCCATGCTGGTTGATTTATTTCAGAGTCTTTGTGATTCtttgtc                              >  2:1590451/1‑91 (MQ=255)

                                                                         cAAAAAATGCGTATTGTTTTATAGCTTGATTATTTGCTGGCAGGGTATTTTCTTGTTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAGCa                       <  2:2461569/100‑1 (MQ=255)

                                                                           aaaaaTGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAGCAAt                     >  1:2350038/1‑100 (MQ=255)

                                                                            aaaaTGCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAGCAAtt                    >  2:2483950/1‑100 (MQ=255)

                                                                                 gCATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAGCAATTACGTg               <  1:1309417/100‑1 (MQ=255)

                                                                                  cATATTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAGCAATTACGTgg              <  1:275109/100‑1 (MQ=255)

                                                                                   atatTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAGCAATTACGTGGc             <  1:1110718/100‑1 (MQ=255)

                                                                                   atatTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAGCAATTACGTGGc             <  1:248197/100‑1 (MQ=255)

                                                                                   atatTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAGCAATTACGTGGc             <  2:1405757/100‑1 (MQ=255)

                                                                                    tatTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAGCAATTACGTGGCa            >  2:431435/1‑100 (MQ=255)

                                                                                    tatTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAGCAATTACGTGGCa            >  1:1792651/1‑100 (MQ=255)

                                                                                    tatTGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAGCAATTACGTGGCa            >  2:315380/1‑100 (MQ=255)

                                                                                      ttGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAGCAATTACGTGGCAGa          >  1:721949/1‑100 (MQ=255)

                                                                                       tGTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCCGATTCTTTCTAATTATTTTCCCCGAGCAATTACGTGGCAGAt         >  2:1797086/1‑100 (MQ=255)

                                                                                        gTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAGCAATTACGTGGCAGATc        >  1:2528244/1‑100 (MQ=255)

                                                                                        gTTTTAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAGCAATTACGTGGCAGATc        <  2:2514065/100‑1 (MQ=255)

                                                                                          tttAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTGCTCGAGCAATTACGTGGCAGATCtt      >  2:1257582/1‑100 (MQ=255)

                                                                                           ttAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAGCAATTACGTGGCAGATCttt     <  1:1250138/100‑1 (MQ=255)

                                                                                            tAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAGCAATTACGTGGCAGATCtttt    >  2:1306409/1‑100 (MQ=255)

                                                                                            tAGAGCGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAGCAATTACGTGGCAGATCtttt    <  2:1811685/100‑1 (MQ=255)

                                                                                            tAGAGCGTGAGTATTAGCTTGCAGGGTAGTTCCCTGCGGTTTCATTTATTTGATAGTCTTTCTAATTATTTTCCCCCAGCAATTATGTGGCAGACCttc     <  2:803073/99‑2 (MQ=255)

TTGCGGGTCAGATGTAATGATTCACTCATTCCTTTTCTCCATTTTTGCTTTTTCAGGGACGACAACATCCCTGCAAAAAATGCATATTGTTTTAGAGTGTGATTATTAGCTGGCAGGGTAGTTCCCTGCTGTTTCATTTATTTCAGATTCTTTCTAATTATTTTCCCCGAGCAATTACGTGGCAGATCTTTTCT  >  NC_000913/36134‑36327

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`