Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_000913	1,100,233	G→A	100%	intergenic (+39/‑63)	ycdY → / → ycdZ	redox enzyme maturation protein (REMP) chaperone for YcdX/DUF1097 family inner membrane protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,100,233	0	G	A	100.0%	313.5 / ‑6.7	94	intergenic (+39/‑63)	ycdY/ycdZ	redox enzyme maturation protein (REMP) chaperone for YcdX/DUF1097 family inner membrane protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base A (38/55);  minor base T (0/1);  total (38/56)

AACCCGCGATGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTGTTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCATGCGCGGCATGAACATACTTCTCTCTATTGCAATCACAACA  >  NC_000913/1100137‑1100328                                                                                                 |                                                                                                aaCCCGCGATGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATttattg                                                                                              <  2:1090363/100‑1 (MQ=255)   cccGCGATGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATttattgtt                                                                                            <  1:1092457/100‑1 (MQ=255)   cccGCGATGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATttattgtt                                                                                            >  2:2079423/1‑100 (MQ=255)    ccGCGATGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATttgttgttg                                                                                           >  2:1595665/1‑100 (MQ=255)    ccGCGATGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATttattgttg                                                                                           <  1:2546046/100‑1 (MQ=255)     cgcgATGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGc                                                                                          >  1:1115870/1‑100 (MQ=255)     cgcgATGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGc                                                                                          <  1:1333820/100‑1 (MQ=255)      gcgATGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTATGTCACTCATAACTGCAACGGATAATTTATTGTTGCa                                                                                         <  1:1802705/100‑1 (MQ=255)      gcgATGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAGTTTATTGTTGCa                                                                                         <  1:1689836/100‑1 (MQ=255)       cgATGCCATTAGTGCAATGTGGGACCAGCTAGAAGTAGATTCTTAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAACttattgtcg                                                                                           <  2:1315806/97‑3 (MQ=255)          tGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATaaa                                                                                     <  1:1855667/100‑1 (MQ=255)            ccATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAAt                                                                                   <  1:2012520/100‑1 (MQ=255)            ccATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAAt                                                                                   <  1:920244/100‑1 (MQ=255)            ccATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAAt                                                                                   <  1:1249939/100‑1 (MQ=255)             cATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAAtg                                                                                  >  2:2335865/1‑100 (MQ=255)             cATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAAtg                                                                                  >  1:2135387/1‑100 (MQ=255)             cATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAAtg                                                                                  >  1:1570415/1‑100 (MQ=255)             cATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACCCATAACTGCAACGGATAATTTATTGTTGCATAAAAtg                                                                                  <  2:1310729/100‑1 (MQ=255)               ttAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAAtgtg                                                                                <  1:1631974/100‑1 (MQ=255)               ttAGTGCAATGTGGCACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAAtgtg                                                                                <  2:1330104/100‑1 (MQ=255)               atggTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATTTACGTCACTCATAATTGCAACGGATAATTTATTGTTGCATAAAAtgtg                                                                                <  2:212285/97‑1 (MQ=255)               atggTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTTCGTCACTCATAACTGCAACTGATAATTTATTGTTGCATAAAAtgtg                                                                                <  2:1423685/97‑1 (MQ=255)                 aGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAAtgtgtg                                                                              <  2:1338170/100‑1 (MQ=255)                     cAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCg                                                                          >  2:1064429/1‑100 (MQ=255)                       aTGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGAt                                                                        <  2:208185/100‑1 (MQ=255)                       aTGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGAt                                                                        >  1:1233253/1‑100 (MQ=255)                            ggACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCtcat                                                                   <  2:609112/100‑1 (MQ=255)                            ggACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCtcat                                                                   <  1:1253176/100‑1 (MQ=255)                            ggACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCccat                                                                   <  2:1910049/100‑1 (MQ=255)                                 aGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATg                                                              <  2:1425778/100‑1 (MQ=255)                                   cTGGAAGAATATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGc                                                            <  2:996265/100‑1 (MQ=255)                                     ggAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCcg                                                          >  2:1696623/1‑100 (MQ=255)                                     ggAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCcg                                                          >  1:1602369/1‑100 (MQ=255)                                      gaagaaGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCcgc                                                         >  2:2348236/1‑100 (MQ=255)                                        cgtagaTTCTGAAGCATAAGTGTGATAGACCTCACTCATAACTGCAACGAATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATAGATGGCcggg                                                        <  2:375746/96‑3 (MQ=255)                                        agaagaTTCTGAAGAATAAGTGTGATTTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCcg                                                          <  2:26275/97‑1 (MQ=255)                                         gaagaTTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGtt                                                      >  1:1648712/1‑100 (MQ=255)                                         gaagaTTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGtt                                                      <  1:55886/100‑1 (MQ=255)                                         gaagaTTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGtt                                                      <  1:798376/100‑1 (MQ=255)                                          aagaTTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTCCTCGATCTCATTCAT‑GCcgcgca                                                      >  2:1046258/1‑96 (MQ=255)                                           agaTTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGtttt                                                    >  2:857279/1‑100 (MQ=255)                                            cgatCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTc                                                   <  2:2241619/97‑1 (MQ=255)                                             aTTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCt                                                  >  2:1843067/1‑100 (MQ=255)                                             aTTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCt                                                  <  1:126183/100‑1 (MQ=255)                                             aTTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCt                                                  <  1:2543982/100‑1 (MQ=255)                                              ttCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTg                                                 <  1:1268628/100‑1 (MQ=255)                                               tCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGc                                                <  2:2490743/100‑1 (MQ=255)                                               tCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGc                                                <  2:1335842/100‑1 (MQ=255)                                                cTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCt                                               >  2:679630/1‑100 (MQ=255)                                                cTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAAAGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCt                                               >  2:906049/1‑100 (MQ=255)                                                cTGAAGAATAACTGTGATCTACGTCACTCATAACTGCATCGGATAATTTATTTTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGc                                                <  2:1184375/99‑1 (MQ=255)                                                 tGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAACTGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTa                                              <  2:1575965/100‑1 (MQ=255)                                                 tGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTa                                              <  2:43773/100‑1 (MQ=255)                                                  gaagaaTAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTcagatcg                                             >  1:2241633/1‑94 (MQ=255)                                                  gaagaaTAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTAt                                             <  1:2348251/100‑1 (MQ=255)                                                   aagaaTAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATc                                            >  1:1503469/1‑100 (MQ=255)                                                   aagaaTAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATc                                            <  2:765580/100‑1 (MQ=255)                                                    agaaTAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCa                                           >  2:80203/1‑100 (MQ=255)                                                    agaaTAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCa                                           >  1:957236/1‑100 (MQ=255)                                                      aaTAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCAGTCATGGCCGCGTTTTCTGCTATCATg                                         <  1:1554549/100‑1 (MQ=255)                                                         aaGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCATgcgc                                      <  2:45236/100‑1 (MQ=255)                                                          aGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCATGcgcg                                     >  1:2066696/1‑100 (MQ=255)                                                           gtgtGATCTACGTCACTCATAACTGCAACGGATAATTTTTCGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCATGCGCgg                                    <  2:1083217/100‑1 (MQ=255)                                                           gtgtGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCacaactgg                                    >  2:590854/1‑93 (MQ=255)                                                           gtgtGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCATGCGCgg                                    >  2:2044065/1‑100 (MQ=255)                                                           gtgtGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCATGCGCgg                                    >  2:737921/1‑100 (MQ=255)                                                           gtgtGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCATGCGCgg                                    <  1:2237941/100‑1 (MQ=255)                                                           gtgtGATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCATGCGCgg                                    >  1:95794/1‑100 (MQ=255)                                                            tgtgATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCATGCGCGGc                                   <  2:2461680/100‑1 (MQ=255)                                                              tgATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCATGCGCGGCAt                                 <  2:2029906/100‑1 (MQ=255)                                                               gATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCATGCGCGGCATg                                >  1:1081023/1‑100 (MQ=255)                                                               gATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCATGCGCGGCATg                                >  2:1821838/1‑100 (MQ=255)                                                               gATCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCATGCGCGGCATg                                <  1:1056210/100‑1 (MQ=255)                                                                 tCTACGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCATGCGCGGCATGaa                              >  1:1258158/1‑100 (MQ=255)                                                                    aCGTCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCATGCGCGGCATGAACAt                           <  2:1676012/100‑1 (MQ=255)                                                                       tCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCATGCGCGGCATGAACATACt                        <  2:438760/100‑1 (MQ=255)                                                                       tCACTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCATGCGCGGCATGAACATACt                        <  2:485805/100‑1 (MQ=255)                                                                         aCTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCATGTGCGGCATGAACATACTtc                      <  1:1812259/100‑1 (MQ=255)                                                                          cTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCATGCGCGGCATGAACATACTtct                     >  2:805278/1‑100 (MQ=255)                                                                          cTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCATGCGCGGCATGAACATACTtct                     >  2:279339/1‑100 (MQ=255)                                                                          cTCATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCATGCGCGGCATGAACATACTtct                     >  1:1971715/1‑100 (MQ=255)                                                                            cATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCATGCGCGGCATGAACATACTtctct                   <  1:1903570/100‑1 (MQ=255)                                                                            cATAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCATGCGCGGCATGAACATACTtctct                   >  1:1995368/1‑100 (MQ=255)                                                                             aTAACTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTATTCTGCTATCATGCGCGGCATGAACATACTtctctc                  <  2:3756/100‑1 (MQ=255)                                                                                aCTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCATGCGCGGCATGAACATACTTCTCTCTAt               >  1:642881/1‑100 (MQ=255)                                                                                 cTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCATGCGCGGCATGAACATACTTCTCTCTAtt              <  2:1318359/100‑1 (MQ=255)                                                                                 cTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCATGCGCGGCATGAACATACTTCTCTCTAtt              >  1:1318368/1‑100 (MQ=255)                                                                                 cTGCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCATGCGCGGCATGAACATACTTCTCTCTAtt              <  2:1111917/100‑1 (MQ=255)                                                                                   gCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCATGCGCGGCATGAACATACTTCTCTCTATTGc            >  1:206814/1‑100 (MQ=255)                                                                                   gCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCATGCGCGGCATGAACATACTTCTCTCTATTGc            >  2:1079861/1‑100 (MQ=255)                                                                                   gCAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCATGCGCGGCATGAACATACTTCTCTCTATTGc            >  2:1196146/1‑100 (MQ=255)                                                                                    cAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCATGCGCGGCATGAACATACTTCTCTCTATTGCa           <  1:679637/100‑1 (MQ=255)                                                                                    cAACGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCATGCGCGGCATGAACATACTTCTCTCTATTGCa           >  1:926638/1‑100 (MQ=255)                                                                                     aaCGGATAATTTATTGTTGCAAAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCATGCGCGGCATGAACATACTTCTCTCTATTGCaa          <  2:330682/100‑1 (MQ=255)                                                                                       cGGATAATTTATTGTTGCATACAATGTGTCCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCATGCGCGGCATGAACATACTTCTCTCTATTGCAATc        <  2:916973/100‑1 (MQ=255)                                                                                       cGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCATGCGCGGCATGAACATACTTCTCTCTATTGCAATc        <  1:576903/100‑1 (MQ=255)                                                                                       cGGATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCATGCGCGGCATGAACATACTTCTCTCTATTGCAATc        <  1:1232812/100‑1 (MQ=255)                                                                                        ggATAATTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCATGCGCGGCATGAACATACTTCTCTCTATTGCAATca       <  2:1233245/100‑1 (MQ=255)                                                                                            aaTTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCATGCGCGGCATGAACATACTTCTCTCTATTGCAATCacaac   >  2:694429/1‑100 (MQ=255)                                                                                             aTTTATTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCATGCGCGGCATGAACATACTTCTCTCTATTGCAATCacaaca  <  1:1282318/100‑1 (MQ=255)                                                                                                 |                                                                                                AACCCGCGATGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTGTTGTTGCATAAAATGTGTGCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCATGCGCGGCATGAACATACTTCTCTCTATTGCAATCACAACA  >  NC_000913/1100137‑1100328

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑