BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,706,029	0	T	C	26.5%	414.0 / 171.5	271	intergenic (‑239/+69)	dppB/dppA	dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor
Reads supporting (aligned to +/- strand): ref base T (100/80); new base C (63/2); total (189/82)
Fisher's exact test for biased strand distribution p-value = 2.13e-11
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.15e-01

Only 100 of 278 total aligned reads displayed.

TACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGT  >  NC_000913/3705931‑3706128

taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAt‑‑t‑‑‑tt                                                                                                      <  2:212359/100‑1 (MQ=255)

  cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑‑T‑‑‑TTc                                                                                                     >  1:1693706/1‑99 (MQ=255)

  cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑g                                                                                                  <  2:1099787/100‑1 (MQ=255)

  cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑g                                                                                                  >  1:978383/1‑100 (MQ=255)

   aGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGGGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑Gt                                                                                                 >  1:1851281/1‑100 (MQ=255)

    gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑GTa                                                                                                >  1:1985488/1‑100 (MQ=255)

     ggcataaaCAAAGCGCACTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑GTAg                                                                                               >  2:2701999/8‑100 (MQ=18)

     aTTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑GTAg                                                                                               >  2:1950292/1‑100 (MQ=255)

       tgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑GTAGGc                                                                                             <  2:1707828/100‑1 (MQ=255)

          tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑GTAGGCCTg                                                                                          <  1:2698701/100‑1 (MQ=255)

             cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATa                                                                                       >  1:3334857/1‑100 (MQ=255)

                aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGc                                                                                    <  2:3334909/100‑1 (MQ=255)

                 gTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGTCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCg                                                                                   <  2:1683037/100‑1 (MQ=255)

                 gTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCg                                                                                   <  2:2119197/100‑1 (MQ=255)

                  tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCgg                                                                                  <  2:3041055/100‑1 (MQ=255)

                    cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAg                                                                                <  1:3380067/100‑1 (MQ=255)

                      cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAgcg                                                                              <  2:200376/100‑1 (MQ=255)

                       tttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAgcgc                                                                             <  1:511862/100‑1 (MQ=255)

                        ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑TAAATCGTGCAAATTCAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCa                                                                            <  1:2432192/100‑1 (MQ=255)

                         tttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCA‑GAAA‑‑C‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCAt                                                                           >  2:2917761/8‑100 (MQ=18)

                          ttgtaggCCGGATAAGGCGTTTACGCCGCATCTGGCCTAC‑AAATTCTTCCAAATTCAATATATTGCA‑GAAA‑‑T‑‑‑CAT‑‑GTAGGCCTGATAAGCGTAGCGCATc                                                                          >  2:3229828/7‑100 (MQ=18)

                           tgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACCTGCAAATTCAATATATTGCA‑GGAT‑‑A‑‑‑CGT‑‑GTAGGCCTGATAAGCGTAGCGCATCa                                                                         >  1:863251/6‑100 (MQ=18)

                            ttATGCCGGAGGCGGCGTTAACGCCTTGTCCGGCCTAC‑AAAATCGTGCAAATTGAATACATTGCA‑GAAT‑‑G‑‑‑TTC‑‑GTAGGCCTGAGAAGCGGAGCGCATCAg                                                                        >  1:2027701/1‑100 (MQ=18)

                            gtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAATGTGCAAATTCAATAAATTGC‑‑‑AAT‑‑TCAACTT‑‑GTAGGCCTGATAAGCGCAGCGCATCa                                                                         >  2:2191371/5‑100 (MQ=21)

                            gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCA‑CCAT‑‑C‑‑‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAg                                                                        >  2:2786412/5‑100 (MQ=21)

                            gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGCA‑ATCT‑‑C‑‑‑CGT‑‑GTAGGCCTGATAAGCGTAGCGCATCAg                                                                        >  2:3063648/5‑100 (MQ=18)

                             tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAgg                                                                       >  2:1173356/1‑100 (MQ=255)

                              aggCCGGATAAGGCGTTCGCGCCGCATCCGGCCTAC‑AAAAGTTTGCAAATTCAATAAATTGCA‑GAAT‑‑T‑‑‑CAT‑‑GTAGGCCTGATAAGCGAAGCGCATCAGGc                                                                      >  1:66525/3‑100 (MQ=17)

                              aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCA‑CCAT‑‑C‑‑‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc                                                                      >  2:2226113/3‑100 (MQ=21)

                              aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGCA‑GGAG‑‑T‑‑‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa                                                                     >  2:3443466/3‑100 (MQ=21)

                              aTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc                                                                      <  2:265218/100‑1 (MQ=255)

                               ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GAATC‑C‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAt                                                                    >  2:394775/2‑100 (MQ=18)

                               ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCGTGCAAATTCAATACATTGCA‑TGGG‑‑C‑‑‑CAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa                                                                     >  2:1145500/2‑100 (MQ=17)

                               ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCA‑GTTT‑‑A‑‑‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCa                                                                     >  2:2722978/2‑100 (MQ=25)

                               ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCA‑GTTT‑‑A‑‑‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCa                                                                     >  1:1352763/2‑100 (MQ=21)

                               ggCCGGATAAGGCGTTCACGCCGCATCCGGACTAC‑AAAACTTTGCAAATTCAATATATTGC‑‑‑AAT‑‑C‑‑‑TCCGTGTAGGCCTGATAAGCGTAGAGCATCAGGCa                                                                     >  1:2289709/2‑100 (MQ=18)

                               ggCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa                                                                     >  1:1578152/2‑100 (MQ=17)

                               ggCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa                                                                     >  2:449092/2‑100 (MQ=18)

                                gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GAATC‑C‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtt                                                                   >  2:1851877/1‑100 (MQ=18)

                                gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCA‑GAAA‑‑C‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag                                                                    >  1:218837/1‑99 (MQ=18)

                                gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCA‑GAGT‑‑T‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag                                                                    >  2:3015468/1‑99 (MQ=17)

                                gCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GGAC‑‑C‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag                                                                    >  2:2512027/1‑99 (MQ=18)

                                gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTGCA‑TGAG‑‑C‑‑‑CAC‑‑GTAGGCCTGATAATCGTAGCGAATAAgaaaa                                                                    >  2:1368949/1‑96 (MQ=17)

                                gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACCTGCAAATTCAATATATTGCA‑GGAT‑‑A‑‑‑CGT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa                                                                    >  2:2739321/1‑99 (MQ=17)

                                gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGCA‑GGAG‑‑T‑‑‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtt                                                                   >  1:102586/1‑100 (MQ=21)

                                gCCGGATAAGGCGGTCACGCCGCATCCGGCCTAC‑GAAACCGCAAGAATTCAATATATTGCA‑GGAG‑‑C‑‑‑GGT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag                                                                    >  2:2586407/1‑99 (MQ=18)

                                 ccggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCA‑GAAA‑‑C‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt                                                                   >  2:238962/9‑98 (MQ=18)

                                 ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCA‑GTTT‑‑A‑‑‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaat                                                                   >  2:628674/9‑98 (MQ=21)

                                 ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCATGAAAATTCAATACATTGCA‑AGAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGTAGCGCAGCAgg                                                                       >  1:3045634/9‑96 (MQ=14)

                                 ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGCA‑GGAG‑‑C‑‑‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt                                                                   >  2:2280278/9‑98 (MQ=18)

                                 ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAACCTTGCTAATTCAATATATTGCAGGGAC‑‑T‑‑‑AT‑‑‑GTAGGCCTGATAAGCATAGCGCATCAGGCagc                                                                   >  1:2781434/9‑98 (MQ=18)

                                 ccGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCA‑GAAA‑‑C‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt                                                                   >  1:61140/1‑98 (MQ=18)

                                  ctgataaggcgTTTACGCCTTATCAGGCCTAC‑AAGATCGTGCAAATTCAACATATTGC‑‑CACT‑‑C‑‑‑ACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCaat                                                                   >  2:2460863/8‑98 (MQ=25)

                                  cggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATTGTGTAAATTCAATAAATTGAT‑CGAT‑‑C‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagtt                                                                  >  2:747371/8‑97 (MQ=21)

                                  cggataaggcgTTCACGCCGCATCCGACCCAC‑AAAGTCTTGCAAAATCAATAAATTGCAGGAAC‑‑G‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaact                                                                  >  2:417322/8‑97 (MQ=25)

                                   ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCGAATTCAATATATTGCA‑GAGC‑‑T‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt                                                                 >  1:1900459/7‑100 (MQ=17)

                                   ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCA‑GAGT‑‑T‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt                                                                 >  1:1664766/7‑100 (MQ=17)

                                   ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAATGTGCAAATTCAATAAATTGCA‑‑ATTCAA‑‑‑CTT‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaatt                                                                  >  2:821523/7‑97 (MQ=21)

                                   ggataaggcgTTCACGCCGCATCCGGCGTAC‑GAAATCGTGCTAATTCAATATATTGTG‑GGCT‑‑C‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt                                                                 >  2:923982/7‑100 (MQ=18)

                                   ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATTGTGTAAATTCAATAAATTGAT‑CGAT‑‑C‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt                                                                 >  2:527647/7‑100 (MQ=21)

                                   ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAGCACGCAAACTCAATATATTGCA‑GAGA‑‑T‑‑‑CAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAattt                                                                 >  1:324604/7‑100 (MQ=17)

                                   ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAACTGTGCAAATTCAATATATTGCA‑GGAA‑‑A‑‑‑CAC‑‑GTAGGCCTGATAAGCGAAGCACATCAGGCAgttt                                                                 >  2:3182987/7‑100 (MQ=18)

                                   ggataaggcgTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGCA‑GGAG‑‑T‑‑‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtttat                                                                >  2:2554132/7‑98 (MQ=21)

                                   ggATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtttt                                                                 >  2:2951293/1‑100 (MQ=255)

                                   ggATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtttt                                                                 >  2:197564/1‑100 (MQ=255)

                                   ggATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtgt                                                                  >  2:3478379/1‑97 (MQ=255)

                                    gataaggcgTTTACGCCGCATCCGGCCTAC‑AAAACAGTGCAAATTCAATATATTGCA‑ATCT‑‑T‑‑‑CTG‑‑GTAGGCCTGATAAGCATCGCGCATCAGGCaagctt                                                                >  2:1538955/6‑95 (MQ=21)

                                    gataaggcgTTCACGCCGCATCCGACCCAC‑AAAGTCTTGCAAAATCAATAAATTGCA‑GGAA‑‑C‑‑‑GAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaactac                                                                >  1:720422/6‑95 (MQ=25)

                                     ataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATTGTGTAAATTCAATAAATTGAT‑CGAT‑‑C‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAGTtttg                                                               >  1:374889/5‑100 (MQ=21)

                                       gcggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcc                                                             <  1:2951246/100‑1 (MQ=255)

                                        cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCTGGCATTtttgcgt                                                            <  2:2359807/100‑3 (MQ=255)

                                        cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct                                                            >  1:417908/1‑100 (MQ=255)

                                         ggcgTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCA‑CCAT‑‑C‑‑‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaattctgtgtt                                                           <  1:2226081/100‑11 (MQ=25)

                                         ggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGAGAATCAGGCATTtttgc                                                              >  1:3231777/1‑97 (MQ=255)

                                          gcgTTTACGCCGCATCCGGCCTAC‑AAAAATGTGCAAATTCAATAAATTGC‑‑‑AAT‑‑TCAACTT‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCAatttggcgtt                                                           >  2:1765652/1‑94 (MQ=25)

                                          gcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgccttt                                                          <  2:2314379/100‑1 (MQ=255)

                                           cgTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTGCA‑GAGA‑‑T‑‑‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAATtttgcgtttg                                                         >  1:131119/1‑100 (MQ=17)

                                            gTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc                                                        >  2:950791/1‑100 (MQ=255)

                                               aaCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAt                                                     >  1:211583/1‑100 (MQ=255)

                                                 cGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCa                                                   >  2:1242562/1‑100 (MQ=255)

                                                    cTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTc                                                >  2:2888958/1‑100 (MQ=255)

                                                        tCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGt                                            <  1:1725289/100‑1 (MQ=255)

                                                        tCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGt                                            <  1:1411125/100‑1 (MQ=255)

                                                        tCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGt                                            >  2:3387137/1‑100 (MQ=255)

                                                           ggCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATg                                         >  2:693601/1‑100 (MQ=255)

                                                             ccTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGc                                       <  1:2533937/100‑1 (MQ=255)

                                                                   aaaaTCGTGCAAATTCAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCtttt                                   <  2:1223838/99‑1 (MQ=255)

                                                                     aaTCGTGCAAATTCAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAat                                <  2:1449453/100‑1 (MQ=255)

                                                                     aaTCGTGCAAATTCAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAat                                <  1:2611307/100‑1 (MQ=255)

                                                                             aaaTTCAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGAt                        >  2:330244/1‑100 (MQ=255)

                                                                                  cAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAgaga                   <  1:1059153/100‑1 (MQ=255)

                                                                                      aCATTGCA‑GAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGtt               >  1:1541030/1‑100 (MQ=255)

                                                                                       cATTGCA‑GAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGttt              <  1:1200172/100‑1 (MQ=255)

                                                                                           gCA‑GAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGa          >  1:389314/1‑100 (MQ=255)

                                                                                           gCA‑GAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGa          >  1:1261276/1‑100 (MQ=255)

                                                                                            cA‑GAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGaa         >  1:2464455/1‑100 (MQ=255)

                                                                                               gAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGt       <  2:2849576/100‑1 (MQ=255)

                                                                                                aaT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTg      <  1:2216764/100‑1 (MQ=255)

                                                                                                aaT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCGTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTg      <  1:2904003/100‑1 (MQ=255)

                                                                                                 aT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGa     <  1:2317937/100‑1 (MQ=255)

TACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGT  >  NC_000913/3705931‑3706128

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`